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  1. Article

    Open Access

    Cis-regulatory evolution of the recently expanded Ly49 gene family

    Comparative genomics has revealed the rapid expansion of multiple gene families involved in immunity. Members within each gene family often evolved distinct roles in immunity. However, less is known about the ...

    Changxu Fan, **aoyun **ng, Samuel J. H. Murphy in Nature Communications (2024)

  2. Article

    Open Access

    Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

    Previous urinary tract infections (UTIs) can predispose one to future infections; however, the underlying mechanisms affecting recurrence are poorly understood. We previously found that UTIs in mice cause diff...

    Seongmi K. Russell, Jessica K. Harrison, Benjamin S. Olson in Nature Microbiology (2023)

  3. No Access

    Article

    Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements

    Cryptic promoters within transposable elements (TEs) can be transcriptionally reactivated in tumors to create new TE-chimeric transcripts, which can produce immunogenic antigens. We performed a comprehensive s...

    Nakul M. Shah, H. Josh Jang, Yonghao Liang, Ju Heon Maeng in Nature Genetics (2023)

  4. No Access

    Article

    Cell-type-specific 3D epigenomes in the develo** human cortex

    Lineage-specific epigenomic changes during human corticogenesis have been difficult to study owing to challenges with sample availability and tissue heterogeneity. For example, previous studies using single-ce...

    Michael Song, Mark-Phillip Pebworth, **aoyu Yang, Armen Abnousi, Changxu Fan in Nature (2020)

  5. Article

    Author Correction: Exploring the coronavirus pandemic with the WashU Virus Genome Browser

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Jennifer A. Flynn, Deepak Purushotham, Mayank N. K. Choudhary in Nature Genetics (2020)

  6. Article

    Exploring the coronavirus pandemic with the WashU Virus Genome Browser

    The WashU Virus Genome Browser is a web-based portal for efficient visualization of viral ‘omics’ data in the context of a variety of annotation tracks and host infection responses. The browser features both a...

    Jennifer A. Flynn, Deepak Purushotham, Mayank N. K. Choudhary in Nature Genetics (2020)