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  1. Article

    Open Access

    Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule

    Cystic echinococcosis is a socioeconomically important parasitic disease caused by the larval stage of the canid tapeworm Echinococcus granulosus, afflicting millions of humans and animals worldwide. The developm...

    Pasi K. Korhonen, Liina Kinkar, Neil D. Young, Huimin Cai in Communications Biology (2022)

  2. Article

    Open Access

    Expanded complement of Niemann-Pick type C2-like protein genes in Clonorchis sinensis suggests functions beyond sterol binding and transport

    The parasitic flatworm Clonorchis sinensis inhabits the biliary tree of humans and other piscivorous mammals. This parasite can survive and thrive in the bile duct, despite exposure to bile constituents and host ...

    Marziyeh Anari, Andreas J. Stroehlein, Ross S. Hall in Parasites & Vectors (2020)

  3. Article

    Open Access

    Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host

    Toxocara canis is quite closely related to Ascaris suum but its biology is more complex, involving a phase of arrested development (diapause or hypobiosis) in tissues as well as transplacental and transmammary tr...

    Guangxu Ma, Tao Wang, Pasi K. Korhonen, Shuai Nie, Gavin E. Reid in Parasites & Vectors (2019)

  4. Article

    Open Access

    Screening of the ‘Stasis Box’ identifies two kinase inhibitors under pharmaceutical development with activity against Haemonchus contortus

    In partnership with the Medicines for Malaria Venture (MMV), we screened a collection (‘Stasis Box’) of 400 compounds (which have been in clinical development but have not been approved for illnesses other tha...

    Yaqing Jiao, Sarah Preston, Anson V. Koehler, Andreas J. Stroehlein in Parasites & Vectors (2017)

  5. Article

    Open Access

    Phylogenomic and biogeographic reconstruction of the Trichinella complex

    Trichinellosis is a globally important food-borne parasitic disease of humans caused by roundworms of the Trichinella complex. Extensive biological diversity is reflected in substantial ecological and genetic var...

    Pasi K. Korhonen, Edoardo Pozio, Giuseppe La Rosa in Nature Communications (2016)

  6. No Access

    Article

    Particle Swarm Optimisation for Protein Motif Discovery

    In this paper, a modified particle swarm optimisation algorithm is proposed for protein sequence motif discovery. Protein sequences are represented as a chain of symbols and a protein sequence motif is a short...

    Bill C. H. Chang, Asanga Ratnaweera in Genetic Programming and Evolvable Machines (2004)

  7. No Access

    Chapter

    Mining of Labeled Incomplete Data Using Fast Dimension Partitioning

    Two Dimensional Partitioning Techniques are proposed in this paper for fast mining of labeled data with missing values. The first Dimensional Partitioning Technique (DPT1) generates a classifier model by the u...

    Bill C. H. Chang, Saman K. Halgamuge in Data Mining and Computational Intelligence (2001)