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  1. Article

    Open Access

    SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics

    Efficiently map** of cell types in situ remains a major challenge in spatial transcriptomics. Most spot deconvolution tools ignore spatial coordinate information and perform extremely slow on large datasets....

    Asish Kumar Swain, Vrushali Pandit, Jyoti Sharma, Pankaj Yadav in Communications Biology (2024)

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    Article

    Single-cell transcriptome analysis identifies novel biomarkers involved in major liver cancer subtypes

    Hepatocellular carcinoma (HCC) and intrahepatic cholangiocarcinoma (ICC) are the two aggressive subtypes of liver cancer (LC). Immense cellular heterogeneity and cross-talk between cancer and healthy cells mak...

    Asish Kumar Swain, Prashant Pandey, Riddhi Sera… in Functional & Integrative Genomics (2023)