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Open AccessEurope PMC annotated full-text corpus for gene/proteins, diseases and organisms
Named entity recognition (NER) is a widely used text-mining and natural language processing (NLP) subtask. In recent years, deep learning methods have superseded traditional dictionary- and rule-based NER appr...
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Protocol
AgroLD: A Knowledge Graph Database for Plant Functional Genomics
Recent advances in high-throughput technologies have resulted in tremendous increase in the amount of data in the agronomic domain. There is an urgent need to effectively integrate complementary information to...
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Open AccessFinding gene regulatory network candidates using the gene expression knowledge base
Network-based approaches for the analysis of large-scale genomics data have become well established. Biological networks provide a knowledge scaffold against which the patterns and dynamics of ‘omics’ data can be...
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Article
Open AccessOLSVis: an animated, interactive visual browser for bio-ontologies
More than one million terms from biomedical ontologies and controlled vocabularies are available through the Ontology Lookup Service (OLS). Although OLS provides ample possibility for querying and browsing ter...
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Article
Open AccessONTO-ToolKit: enabling bio-ontology engineering via Galaxy
The biosciences increasingly face the challenge of integrating a wide variety of available data, information and knowledge in order to gain an understanding of biological systems. Data integration is supported...
