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Article
Open AccessCorrection: Identification of quantitative trait loci associated with leaf rust resistance in rye by precision map**
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Open AccessIdentification of quantitative trait loci associated with leaf rust resistance in rye by precision map**
Leaf rust (LR) is among the most destructive fungal diseases of rye (Secale cereale L.). Despite intensive research using various analytical and methodological approaches, such as quantitative trait locus (QTL) m...
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Article
Open AccessRiparian populations of minnesota reed canarygrass (Phalaris arundinacea) are most likely native, based on SNPs (DArTseqLD)
The native vs. exotic status of reed canarygrass (RCG), a major invasive species of Minnesota wetlands, is unknown. The aim of this study was to investigate this native vs. exotic status to enhance its managem...
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Article
Open AccessDiversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints
Undomesticated wild species, crop wild relatives, and landraces represent sources of variation for wheat improvement to address challenges from climate change and the growing human population. Here, we study 5...
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Open AccessDiscovery of thermophilic Bacillales using reduced-representation genoty** for identification
This study demonstrates the use of reduced-representation genoty** to provide preliminary identifications for thermophilic bacterial isolates. The approach combines restriction enzyme digestion and PCR with ...
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Open AccessIdentification of quantitative trait loci (QTL) controlling resistance to pea weevil (Bruchus pisorum) in a high-density integrated DArTseq SNP-based genetic map of pea
Pea weevil (Bruchus pisorum) is a damaging insect pest affecting pea (Pisum sativum) production worldwide. No resistant cultivars are available, although some levels of incomplete resistance have been identified ...
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Article
Open AccessGenetic Analysis of High Protein Content in ‘AC Proteus’ Related Soybean Populations Using SSR, SNP, DArT and DArTseq Markers
Key message: Several AC Proteus derived genomic regions (QTLs, SNPs) have been identified which may prove useful for further development of high yielding high protein cultivars and allele-specific marker devel...
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Open AccessThe first genetic map for yellow lupin enables genetic dissection of adaptation traits in an orphan grain legume crop
Yellow lupin (Lupinus luteus L.) is a promising grain legume for productive and sustainable crop rotations. It has the advantages of high tolerance to soil acidity and excellent seed quality, but its current yiel...
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Population structure, genetic diversity and linkage disequilibrium in a macadamia breeding population using SNP and silicoDArT markers
Macadamia (Macadamia integrifolia Maiden & Betche, Macadamia tetraphylla L.A.S. Johnson and their hybrids) is grown commercially around the world for its high-quality edible kernel. Traditional breeding efforts i...
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Article
Concordant divergence of mitogenomes and a mitonuclear gene cluster in bird lineages inhabiting different climates
Metabolic processes in eukaryotic cells depend on interactions between mitochondrial and nuclear gene products (mitonuclear interactions). These interactions could have a direct role in population divergence. ...
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Article
Open AccessA mosaic monoploid reference sequence for the highly complex genome of sugarcane
Sugarcane (Saccharum spp.) is a major crop for sugar and bioenergy production. Its highly polyploid, aneuploid, heterozygous, and interspecific genome poses major challenges for producing a reference sequence. We...
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Article
Open AccessEffective BAC clone anchoring with genoty**-by-sequencing and Diversity Arrays Technology in a large genome cereal rye
Identification of bacterial artificial chromosome (BAC) clones containing specific sequences is a prerequisite for many applications, such as physical map anchoring or gene cloning. Existing BAC library screen...
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Open AccessExploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin
This first pan-Mediterranean analysis of genetic diversity in wild narrow-leafed lupin revealed strong East–West genetic differentiation of populations, an historic eastward migration, and signatures of geneti...
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Article
High density SNP and DArT-based genetic linkage maps of two closely related oil palm populations
Oil palm (Elaeis guineensis Jacq.) is an outbreeding perennial tree crop with long breeding cycles, typically 12 years. Molecular marker technologies can greatly improve the breeding efficiency of oil palm. This ...
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Article
Open AccessGenomic prediction using DArT-Seq technology for yellowtail kingfish Seriola lalandi
Genomic prediction using Diversity Arrays Technology (DArT) genotype by sequencing platform has not been reported in yellowtail kingfish (Seriola lalandi). The principal aim of this study was to address this know...
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Article
QTL map** and comparative genome analysis of agronomic traits including grain yield in winter rye
Genetic diversity in elite rye germplasm as well as F 2:3 testcross design enables fast Q...
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Open AccessIdentification of Single Nucleotide Polymorphisms Associated with Brown Rust Resistance, α-Amylase Activity and Pre-harvest Sprouting in Rye (Secale cereale L.)
Rye is a crop with relatively high resistance to biotic and abiotic stresses. However, the resistance to brown rust (Puccinia recondita f. sp. secalis) and pre-harvest sprouting are still not satisfactory. High α...
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Open AccessIntegrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes
Bambara groundnut [Vigna subterranea (L) Verdc.] is an indigenous legume crop grown mainly in subsistence and small-scale agriculture in sub-Saharan Africa for its nutritious seeds and its tolerance to drought an...
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Evolutionary relationships in the genus Secale revealed by DArTseq DNA polymorphism
Till this day, there is not much known about the phylogeny of the Secale genus; therefore, in our research, we tried to shed some lights on the issue of rye (Secale genus) taxonomy. The genetic diversity and phyl...
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Article
Open AccessImprovement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods
Recent advances in genomics indicate functional significance of a majority of genome sequences and their long range interactions. As a detailed examination of genome organization and function requires very hig...
