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  1. Article

    Open Access

    Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology

    In the spectrum of colorectal tumors, microsatellite-stable (MSS) tumors with DNA polymerase ε (POLE) mutations exhibit a hypermutated profile, holding the potential to respond to immunotherapy similarly to their...

    Marco Gustav, Nic Gabriel Reitsam, Zunamys I. Carrero in npj Precision Oncology (2024)

  2. Article

    Open Access

    Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities

    The redirection of T cells has emerged as an attractive therapeutic principle in B cell non-Hodgkin lymphoma (B-NHL). However, a detailed characterization of lymphoma-infiltrating T cells across B-NHL entities...

    Tobias Roider, Marc A. Baertsch, Donnacha Fitzgerald in Nature Cell Biology (2024)

  3. Article

    Open Access

    Author Correction: Regression-based Deep-Learning predicts molecular biomarkers from pathology slides

    Omar S. M. El Nahhas, Chiara M. L. Loeffler, Zunamys I. Carrero in Nature Communications (2024)

  4. Article

    Open Access

    Regression-based Deep-Learning predicts molecular biomarkers from pathology slides

    Deep Learning (DL) can predict biomarkers from cancer histopathology. Several clinically approved applications use this technology. Most approaches, however, predict categorical labels, whereas biomarkers are ...

    Omar S. M. El Nahhas, Chiara M. L. Loeffler, Zunamys I. Carrero in Nature Communications (2024)

  5. Article

    Open Access

    High-throughput electron tomography identifies centriole over-elongation as an early event in plasma cell disorders

    Plasma cell disorders are clonal outgrowths of pre-malignant or malignant plasma cells, characterized by extensive chromosomal aberrations. Centrosome abnormalities are a major driver of chromosomal instabilit...

    Sebastian Köhrer, Tobias Dittrich, Martin Schorb, Niels Weinhold in Leukemia (2023)

  6. Article

    Open Access

    Functionally distinct cancer-associated fibroblast subpopulations establish a tumor promoting environment in squamous cell carcinoma

    Cutaneous squamous cell carcinoma (cSCC) is a serious public health problem due to its high incidence and metastatic potential. It may progress from actinic keratosis (AK), a precancerous lesion, or the in sit...

    Sabrina Schütz, Llorenç Solé-Boldo, Carlota Lucena-Porcel in Nature Communications (2023)

  7. Article

    Open Access

    Resolving the spatial architecture of myeloma and its microenvironment at the single-cell level

    In multiple myeloma spatial differences in the subclonal architecture, molecular signatures and composition of the microenvironment remain poorly characterized. To address this shortcoming, we perform multi-re...

    Lukas John, Alexandra M. Poos, Alexander Brobeil, Carolina Schinke in Nature Communications (2023)

  8. Article

    Open Access

    Standardizing lymphangiography and lymphatic interventions: a preclinical in vivo approach with detailed procedural steps

    To present a preclinical in vivo approach for standardization and training of lymphangiography and lymphatic interventions using a pictorial review.

    Feng Pan, Thuy D. Do, Niclas Schmitt, Dominik F. Vollherbst in CVIR Endovascular (2023)

  9. Article

    Open Access

    Spatiotemporal analysis of tumour-infiltrating immune cells in biliary carcinogenesis

    Intraductal papillary neoplasms (IPN) and biliary epithelial neoplasia (BilIN) are well‐defined precursor lesions of biliary tract carcinoma (BTC). The aim of this study was to provide a comprehensive characte...

    Alphonse Charbel, Luca Tavernar, Thomas Albrecht in British Journal of Cancer (2022)

  10. No Access

    Article

    Genoty** circulating tumor DNA of pediatric Hodgkin lymphoma

    We used hybrid capture-targeted next-generation sequencing of circulating cell-free DNA (ccfDNA) of pediatric Hodgkin lymphoma (PHL) patients to determine pathogenic mechanisms and assess the clinical utility ...

    Ann-Kathrin Desch, Kristin Hartung, Ante Botzen, Alexander Brobeil in Leukemia (2020)

  11. Article

    Response to ‘Aberrant expression of TdT in seminomatous germ cell neoplasia’

    Alexander Brobeil, Florian Wagenlehner, Stefan Gattenlöhner in Virchows Archiv (2018)

  12. Article

    Open Access

    Effectiveness of EGFR/HER2-targeted drugs is influenced by the downstream interaction shifts of PTPIP51 in HER2-amplified breast cancer cells

    Breast cancer is the most common female cancerous disease and the second most cause of cancer death in women. About 20–30% of these tumors exhibit an amplification of the HER2/ErbB2 receptor, which is coupled ...

    Eric Dietel, Alexander Brobeil, Claudia Tag, Stefan Gattenloehner in Oncogenesis (2018)

  13. No Access

    Article

    Expression of terminal deoxynucleotidyl transferase (TdT) in classical seminoma: a potential diagnostic pitfall

    Seminomas are the most frequent testicular tumors and in spite of specific markers some histological subtypes can be diagnostically challenging due to the potential overlap of morphologic features and a varian...

    Alexander Brobeil, Florian Wagenlehner, Stefan Gattenlöhner in Virchows Archiv (2018)

  14. No Access

    Article

    The role of high-risk human papillomavirus infections in laryngeal squamous cell carcinoma

    The contribution of human papillomavirus (HPV) to the development and clinical outcome of oropharyngeal cancers has been well documented. The association of HPV in laryngeal squamous cell carcinoma (LSCC) has ...

    Claus Wittekindt, Nora Wuerdemann in European Archives of Oto-Rhino-Laryngology (2017)

  15. No Access

    Article

    Orchestrating cellular signaling pathways—the cellular “conductor” protein tyrosine phosphatase interacting protein 51 (PTPIP51)

    The protein tyrosine phosphatase interacting protein 51 (PTPIP51) is thought to regulate crucial cellular functions such as mitosis, apoptosis, migration, differentiation and communication between organelles a...

    Alexander Brobeil, Eric Dietel, Stefan Gattenlöhner in Cell and Tissue Research (2017)

  16. No Access

    Article

    PTPIP51 in Protein Interactions: Regulation and In Situ Interacting Partners

    This study investigated the regulation of 14-3-3β binding to PTPIP51 by the tyrosine phosphorylation status of PTPIP51. The tyrosine 176 residue is phosphorylated by c-Src. Up to now, nothing is known about th...

    Alexander Brobeil, Manuel Bobrich, Claudia Tag in Cell Biochemistry and Biophysics (2012)

  17. No Access

    Article

    Protein tyrosine phosphatase interacting protein 51—a jack-of-all-trades protein

    Protein tyrosine phosphatase interacting protein 51 (PTPIP51) interacts both in vitro and in vivo with PTP1B, a protein tyrosine phosphatase involved in cellular regulation. PTPIP51 is known to be expressed in...

    Alexander Brobeil, Manuel Bobrich, Monika Wimmer in Cell and Tissue Research (2011)