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  1. Article

    Open Access

    Untargeted metabolomic profiling reveals molecular signatures associated with type 2 diabetes in Nigerians

    Type 2 diabetes (T2D) has reached epidemic proportions globally, including in Africa. However, molecular studies to understand the pathophysiology of T2D remain scarce outside Europe and North America. The aim...

    Ayo P. Doumatey, Daniel Shriner, Jie Zhou, Lin Lei, Guanjie Chen in Genome Medicine (2024)

  2. Article

    Open Access

    Perceptions and beliefs of community gatekeepers about genomic risk information in African cleft research

    A fundamental ethical issue in African genomics research is how socio-cultural factors impact perspectives, acceptance, and utility of genomic information, especially in stigmatizing conditions like orofacial ...

    Abimbola M. Oladayo, Oluwakemi Odukoya, Veronica Sule, Ikenna Molobe in BMC Public Health (2024)

  3. Article

    Open Access

    Mendelian randomization analyses suggest a causal role for circulating GIP and IL-1RA levels in homeostatic model assessment-derived measures of β-cell function and insulin sensitivity in Africans without type 2 diabetes

    In vitro and in vivo studies have shown that certain cytokines and hormones may play a role in the development and progression of type 2 diabetes (T2D). However, studies on their role in T2D in humans are scar...

    Karlijn A. C. Meeks, Amy R. Bentley, Themistocles L. Assimes in Genome Medicine (2023)

  4. Article

    Open Access

    Unappreciated subcontinental admixture in Europeans and European Americans and implications for genetic epidemiology studies

    European-ancestry populations are recognized as stratified but not as admixed, implying that residual confounding by locus-specific ancestry can affect studies of association, polygenic adaptation, and polygen...

    Mateus H. Gouveia, Amy R. Bentley, Thiago P. Leal in Nature Communications (2023)

  5. Article

    Open Access

    Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis

    Genetic variants within nearly 1000 loci are known to contribute to modulation of blood lipid levels. However, the biological pathways underlying these associations are frequently unknown, limiting understandi...

    Stavroula Kanoni, Sarah E. Graham, Yuxuan Wang, Ida Surakka in Genome Biology (2022)

  6. Article

    Open Access

    Mendelian randomization study reveals a causal relationship between adiponectin and LDL cholesterol in Africans

    Adiponectin has been associated with cardiometabolic traits in observational studies across populations, yet it is unclear if these associations are causal. We performed Mendelian randomization (MR) analysis t...

    Karlijn A. C. Meeks, Amy R. Bentley, Ayo P. Doumatey in Scientific Reports (2022)

  7. Article

    Open Access

    An epigenome-wide association study of insulin resistance in African Americans

    African Americans have a high risk for type 2 diabetes (T2D) and insulin resistance. Studies among other population groups have identified DNA methylation loci associated with insulin resistance, but data in A...

    Felix P. Chilunga, Karlijn A. C. Meeks, Peter Henneman in Clinical Epigenetics (2022)

  8. Article

    Open Access

    Whole-genome sequencing reveals de-novo mutations associated with nonsyndromic cleft lip/palate

    The majority (85%) of nonsyndromic cleft lip with or without cleft palate (nsCL/P) cases occur sporadically, suggesting a role for de novo mutations (DNMs) in the etiology of nsCL/P. To identify high impact pr...

    Waheed Awotoye, Peter A. Mossey, Jacqueline B. Hetmanski in Scientific Reports (2022)

  9. Article

    Open Access

    Meta-analyses identify DNA methylation associated with kidney function and damage

    Chronic kidney disease is a major public health burden. Elevated urinary albumin-to-creatinine ratio is a measure of kidney damage, and used to diagnose and stage chronic kidney disease. To extend the knowledg...

    Pascal Schlosser, Adrienne Tin, Pamela R. Matias-Garcia in Nature Communications (2021)

  10. Article

    Open Access

    Epigenome-wide association study of serum urate reveals insights into urate co-regulation and the SLC2A9 locus

    Elevated serum urate levels, a complex trait and major risk factor for incident gout, are correlated with cardiometabolic traits via incompletely understood mechanisms. DNA methylation in whole blood captures ...

    Adrienne Tin, Pascal Schlosser, Pamela R. Matias-Garcia in Nature Communications (2021)

  11. Article

    Evolutionary genetics and acclimatization in nephrology

    Evolutionary processes, including mutation, migration and natural selection, have influenced the prevalence and distribution of various disorders in humans. However, despite a few well-known examples, such as ...

    Adebowale A. Adeyemo, Daniel Shriner, Amy R. Bentley in Nature Reviews Nephrology (2021)

  12. Article

    Open Access

    Genome-wide analyses of multiple obesity-related cytokines and hormones informs biology of cardiometabolic traits

    A complex set of perturbations occur in cytokines and hormones in the etiopathogenesis of obesity and related cardiometabolic conditions such as type 2 diabetes (T2D). Evidence for the genetic regulation of th...

    Karlijn A. C. Meeks, Amy R. Bentley, Mateus H. Gouveia, Guanjie Chen in Genome Medicine (2021)

  13. No Access

    Article

    Plasma cell immunoglobulin heavy chain repertoire dynamics before and after tetanus booster vaccination

    Antibody sequence repertoire analysis of plasma cells (PC) isolated before and 1 week after a vaccine provides time-specific snapshots of the antibody response. Comparison of the immunoglobulin (Ig) sequences ...

    Kyle J. Wolf, Adebowale A. Adeyemo, Kim C. Williamson in Immunogenetics (2021)

  14. Article

    Open Access

    Author Correction: High-depth African genomes inform human migration and health

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03286-9.

    Ananyo Choudhury, Shaun Aron, Laura R. Botigué, Dhriti Sengupta, Gerrit Botha in Nature (2021)

  15. Article

    Open Access

    Endemic Burkitt Lymphoma in second-degree relatives in Northern Uganda: in-depth genome-wide analysis suggests clues about genetic susceptibility

    Mateus H. Gouveia, Isaac Otim, Martin D. Ogwang, Mingyi Wang, Bin Zhu in Leukemia (2021)

  16. Article

    Author Correction to: Endemic Burkitt lymphoma in second-degree relatives in Northern Uganda: in-depth genome-wide analysis suggests clues about genetic susceptibility

    A Correction to this paper has been published: https://doi.org/10.1038/s41375-021-01140-5

    Mateus H. Gouveia, Isaac Otim, Martin D. Ogwang, Mingyi Wang, Bin Zhu in Leukemia (2021)

  17. Article

    Open Access

    Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection

    Genetic factors may influence the susceptibility to high-risk (hr) human papillomavirus (HPV) infection and persistence. We conducted the first genome-wide association study (GWAS) to identify variants associa...

    Sally N. Adebamowo, Adebowale A. Adeyemo, Charles N. Rotimi in BMC Medical Genetics (2020)

  18. No Access

    Article

    High-depth African genomes inform human migration and health

    The African continent is regarded as the cradle of modern humans and African genomes contain more genetic variation than those from any other continent, yet only a fraction of the genetic diversity among Afric...

    Ananyo Choudhury, Shaun Aron, Laura R. Botigué, Dhriti Sengupta, Gerrit Botha in Nature (2020)

  19. Article

    Open Access

    Associations of autozygosity with a broad range of human phenotypes

    In many species, the offspring of related parents suffer reduced reproductive success, a phenomenon known as inbreeding depression. In humans, the importance of this effect has remained unclear, partly because...

    David W Clark, Yukinori Okada, Kristjan H S Moore, Dan Mason in Nature Communications (2019)

  20. Article

    Open Access

    ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response

    Genome analysis of diverse human populations has contributed to the identification of novel genomic loci for diseases of major clinical and public health impact. Here, we report a genome-wide analysis of type ...

    Adebowale A. Adeyemo, Norann A. Zaghloul, Guanjie Chen in Nature Communications (2019)

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