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  1. Article

    Author Correction: Re-engineering the adenine deaminase TadA-8e for efficient and specific CRISPR-based cytosine base editing

    Liang Chen, Biyun Zhu, Gaomeng Ru, Haowei Meng, Yongchang Yan in Nature Biotechnology (2024)

  2. No Access

    Article

    Redifferentiation of genetically modified dedifferentiated chondrocytes in a microcavitary hydrogel

    We genetically modified dedifferentiated chondrocytes (DCs) using lentiviral vectors and adenoviral vectors encoding TGF-β3 (referred to as transgenic groups below) and encapsulated these DCs in the microcavit...

    Yongchang Yao, Ke Chen, Qian Pan, Hui Gao, Weixian Su in Biotechnology Letters (2024)

  3. Article

    Open Access

    Development of a CRISPR-Cas12a based assay for the detection of swine enteric coronaviruses in pig herds in China

    Porcine epidemic diarrhea virus (PEDV), Transmissible gastroenteritis virus (TGEV), Porcine deltacoronavirus (PDCoV) and Swine acute diarrhea syndrome coronavirus (SADS-CoV) rank among the most frequently enco...

    Yongbo **a, Yue Li, Yihong He, **aowei Wang, Wen**g Qiu in Advanced Biotechnology (2024)

  4. No Access

    Article

    Prioritization of risk genes in colorectal cancer by integrative analysis of multi-omics data and gene networks

    Genome-wide association studies (GWASs) have identified over 140 colorectal cancer (CRC)-associated loci; however, target genes at the majority of loci and underlying molecular mechanisms are poorly understood...

    Ming Zhang, **aoyang Wang, Nan Yang, Xu Zhu, Zequn Lu in Science China Life Sciences (2024)

  5. Article

    Open Access

    Integration of ATAC-seq and RNA-seq identifies MX1-mediated AP-1 transcriptional regulation as a therapeutic target for Down syndrome

    Growing evidence has suggested that Type I Interferon (I-IFN) plays a potential role in the pathogenesis of Down Syndrome (DS). This work investigates the underlying function of MX1, an effector gene of I-IFN,...

    Zhenglong Guo, Yongchang Zhu, Hai **ao, Ranran Dai, Wenke Yang in Biological Research (2023)

  6. Article

    Open Access

    A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation

    The 3D crop data obtained during cultivation is of great significance to screening excellent varieties in modern breeding and improvement on crop yield. With the rapid development of deep learning, researchers...

    Dawei Li, Yongchang Wei, Rongsheng Zhu in Plant Methods (2023)

  7. Article

    Open Access

    MGA-seq: robust identification of extrachromosomal DNA and genetic variants using multiple genetic abnormality sequencing

    Genomic abnormalities are strongly associated with cancer and infertility. In this study, we develop a simple and efficient method — multiple genetic abnormality sequencing (MGA-Seq) — to simultaneously detect...

    Da Lin, Yanyan Zou, **nyu Li, **yue Wang, Qin **ao, **aochen Gao in Genome Biology (2023)

  8. No Access

    Article

    Re-engineering the adenine deaminase TadA-8e for efficient and specific CRISPR-based cytosine base editing

    Cytosine base editors (CBEs) efficiently generate precise C·G-to-T·A base conversions, but the activation-induced cytidine deaminase/apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like (AID/APOBEC)...

    Liang Chen, Biyun Zhu, Gaomeng Ru, Haowei Meng, Yongchang Yan in Nature Biotechnology (2023)

  9. Article

    Open Access

    PUM2 aggravates the neuroinflammation and brain damage induced by ischemia–reperfusion through the SLC7A11-dependent inhibition of ferroptosis via suppressing the SIRT1

    Cerebral ischemia–reperfusion (I/R) injury occurs due to the restoration of blood perfusion after cerebral ischemia, which results in the damage of the brain structures and functions. Unfortunately, currently ...

    Qingran Liu, Yongchang Liu, Yan Li, Zhen Hong in Molecular and Cellular Biochemistry (2023)

  10. Article

    Open Access

    A neurodevelopmental epigenetic programme mediated by SMARCD3–DAB1–Reelin signalling is hijacked to promote medulloblastoma metastasis

    How abnormal neurodevelopment relates to the tumour aggressiveness of medulloblastoma (MB), the most common type of embryonal tumour, remains elusive. Here we uncover a neurodevelopmental epigenomic programme ...

    Han Zou, Bradley Poore, Emily E. Brown, Jieqi Qian, Bin **e in Nature Cell Biology (2023)

  11. No Access

    Article

    Seed Priming with Gibberellin Regulates the Germination of Cotton Seeds Under Low-Temperature Conditions

    Exogenous substances play an important role in the response of cotton to low-temperature conditions during the germination stage, but little is known about the mechanism involved. To fill this knowledge gap, e...

    Jun **a, **anzhe Hao, Tangang Wang, Huiqin Li in Journal of Plant Growth Regulation (2023)

  12. Article

    Open Access

    Tumor immune microenvironment and immunotherapy efficacy in BRAF mutation non-small-cell lung cancer

    Previous small-size studies reported BRAF-mutated NSCLC patients have comparable sensitivity to immune checkpoint inhibitors (ICIs). However, how BRAF mutation affects the tumor immune microenvironment (TIME) is ...

    Hui Li, Yongchang Zhang, Yanjun Xu, Zhiyu Huang, Guo** Cheng in Cell Death & Disease (2022)

  13. No Access

    Article

    Quantitative proteomic analysis to understand the role of Arabidopsis thaliana LEAFY COTYLEDON 2 in promoting lipid accumulation in Chlorella sorokiniana by upregulating photosynthetic proteins and G3PDH

    Microalgae have attracted significant attention for biofuel production and transcription factors that can effectively regulate lipid accumulation in higher plants. In this study we expressed the transcription ...

    Yilin Liu, **aomin Huo, Shanshan Yu, Wenhao Dong in Journal of Applied Phycology (2022)

  14. Article

    Open Access

    FOXA1 prevents nutrients deprivation induced autophagic cell death through inducing loss of imprinting of IGF2 in lung adenocarcinoma

    Lung cancer remains one of the most common malignancies and the leading cause of cancer-related death worldwide. Forkhead box protein A1 (FOXA1) is a pioneer factor amplified in lung adenocarcinoma (LUAD). How...

    Junjun Li, Yongchang Zhang, Li Wang, Min Li, Jianbo Yang, Pan Chen in Cell Death & Disease (2022)

  15. Article

    Open Access

    A novel molecular subtypes and risk model based on inflammatory response-related lncrnas for bladder cancer

    Inflammation and long noncoding RNAs (lncRNAs) are gradually becoming important in the development of bladder cancer (BC). Nevertheless, the potential of inflammatory response-related lncRNAs (IRRlncRNAs) as a...

    Fucai Tang, Jiahao Zhang, Zechao Lu, Haiqin Liao, Chuxian Hu, Yuexue Mai in Hereditas (2022)

  16. Article

    Open Access

    Upregulation of CCT3 predicts poor prognosis and promotes cell proliferation via inhibition of ferroptosis and activation of AKT signaling in lung adenocarcinoma

    Chaperonin containing TCP1 subunit 3 (CCT3) acts as an oncogene in cancers, whereas its role and underlying mechanisms in lung adenocarcinoma (LUAD) are poorly understood. This study investigated the clinical ...

    Kun Wang, Jian He, Changling Tu, Hui Xu, Xugang Zhang in BMC Molecular and Cell Biology (2022)

  17. Article

    Open Access

    Structural derivatization strategies of natural phenols by semi-synthesis and total-synthesis

    Structural derivatization of natural products has been a continuing and irreplaceable source of novel drug leads. Natural phenols are a broad category of natural products with wide pharmacological activity and...

    Ding Lin, Senze Jiang, Ailian Zhang, Tong Wu in Natural Products and Bioprospecting (2022)

  18. No Access

    Article

    Prediction and validation of cross-protective candidate antigen of Hyalomma asiaticum cathepsin L between H. asiaticum and H. anatolicum

    Hyalomma asiaticum and H. anatolicum are tick species in Eurasia and Africa with major medical and veterinary significance. Beside their direct pathogenic effects, H. asiaticum and H. anatolicum are vectors of im...

    Ruiqi Song, Xuejie Zhai, **nli Fan, Yongchang Li in Experimental and Applied Acarology (2022)

  19. No Access

    Article

    SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment

    Spatial metabolomics can reveal intercellular heterogeneity and tissue organization. Here we report on the spatial single nuclear metabolomics (SEAM) method, a flexible platform combining high-spatial-resoluti...

    Zhiyuan Yuan, Qiming Zhou, Lesi Cai, Lin Pan, Weiliang Sun, Shiwei Qumu in Nature Methods (2021)

  20. Article

    Open Access

    Phase separation of Epstein-Barr virus EBNA2 protein reorganizes chromatin topology for epigenetic regulation

    Epstein-Barr virus nuclear antigen 2 (EBNA2) is a transactivator of viral and cellular gene expression, which plays a critical role in the Epstein-Barr virus-associated diseases. It was reported that EBNA2 reg...

    Yiting Yang, **dong Ye, Ranran Dai, Zhaoqiang Li, Yan Zhang in Communications Biology (2021)

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