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The auxin response factor (ARF) gene family in Cyclocarya paliurus: genome-wide identification and their expression profiling under heat and drought stresses

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  1. Article

    Open Access

    Identification of immune-associated biomarkers of diabetes nephropathy tubulointerstitial injury based on machine learning: a bioinformatics multi-chip integrated analysis

    Diabetic nephropathy (DN) is a major microvascular complication of diabetes and has become the leading cause of end-stage renal disease worldwide. A considerable number of DN patients have experienced irrevers...

    Lin Wang, Jiaming Su, Zhongjie Liu, Shaowei Ding, Yaotan Li, Baoluo Hou in BioData Mining (2024)

  2. Article

    Open Access

    Therapeutic targeting of ARID1A-deficient cancer cells with RITA (Reactivating p53 and inducing tumor apoptosis)

    ARID1A, a component of the SWI/SNF chromatin-remodeling complex, is frequently mutated in various cancer types and has emerged as a potential therapeutic target. In this study, we observed that ARID1A-deficien...

    Zihuan Wang, Xu Zhang, Yuchen Luo, Yijiang Song, Cheng **ang in Cell Death & Disease (2024)

  3. Article

    Open Access

    Single-nucleotide variant calling in single-cell sequencing data with Monopogen

    Single-cell omics technologies enable molecular characterization of diverse cell types and states, but how the resulting transcriptional and epigenetic profiles depend on the cell’s genetic background remains ...

    **zhuang Dou, Yukun Tan, Kian Hong Kock, Jun Wang, Xuesen Cheng in Nature Biotechnology (2024)

  4. Article

    Open Access

    Population genetic analyses highlight an eastward dispersal of Puccinia striiformis f. sp. tritici from the Shaanxi province to the North China Plain

    Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a common airborne wheat disease. The frequent occurrence at a large scale in China has caused significant yield losses and poses a consid...

    Congying Zhou, Xuan Lv, **nlei Qi, Ahsan Abdullah, Qiuyu Sun in Phytopathology Research (2024)

  5. Article

    Open Access

    A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models

    Idiopathic pulmonary fibrosis (IPF) is an aggressive interstitial lung disease with a high mortality rate. Putative drug targets in IPF have failed to translate into effective therapies at the clinical level. ...

    Feng Ren, Alex Aliper, Jian Chen, Heng Zhao, Sujata Rao in Nature Biotechnology (2024)

  6. Article

    Open Access

    Human osteoarthritic articular cartilage stem cells suppress osteoclasts and improve subchondral bone remodeling in experimental knee osteoarthritis partially by releasing TNFAIP3

    Though articular cartilage stem cell (ACSC)-based therapies have been demonstrated to be a promising option in the treatment of diseased joints, the wide variety of cell isolation, the unknown therapeutic targ...

    Zhi-Ling Li, **ao-Tong Li, Rui-Cong Hao, Fei-Yan Wang in Stem Cell Research & Therapy (2023)

  7. Article

    Open Access

    The chromosome-scale reference genome of mirid bugs (Adelphocoris suturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation

    Adelphocoris suturalis (Hemiptera: Miridae) is a notorious agricultural pest, which causes serious economic losses to a diverse range of agricultural crops around the world. The poor understanding of its genomic ...

    Zhong** Xu, Guanying Wang, **g Luo, Mingju Zhu, Lisong Hu, Sijia Liang in BMC Biology (2023)

  8. Article

    Open Access

    Structural insights into MIC2 recognition by MIC2-associated protein in Toxoplasma gondii

    Microneme protein 2 (MIC2) and MIC2-associated protein (M2AP) play crucial roles in the gliding motility and host cell invasion of Toxoplasma gondii. Complex formation between MIC2 and M2AP is required for matura...

    Su Zhang, Fangfang Wang, Dujuan Zhang, Dongsheng Liu, Wei Ding in Communications Biology (2023)

  9. Article

    Open Access

    A novel N6-Deoxyadenine methyltransferase METL-9 modulates C. elegans immunity via dichotomous mechanisms

    N6-Methyldeoxyadenine (6mA) has been rediscovered as a DNA modification with potential biological function in metazoans. However, the physiological function and regulatory mechanisms regarding the establishment,....

    Chengchuan Ma, Tingling Xue, Qi Peng, Jie Zhang, Jialiang Guan in Cell Research (2023)

  10. Article

    Open Access

    Gene editing with an oxathiapiprolin resistance selection marker reveals that PuLLP, a loricrin-like protein, is required for oospore development in Pythium ultimum

    Oomycetes, such as Pythium species, contain numerous devastating plant pathogens that inflict substantial economic losses worldwide. Although CRISPR/Cas9-based genome editing is available, the selection markers a...

    Hui Feng, Tianli Liu, Jiaxu Li, Chuanxu Wan, Feifei Ding in Phytopathology Research (2023)

  11. Article

    Open Access

    P38-DAPK1 axis regulated LC3-associated phagocytosis (LAP) of microglia in an in vitro subarachnoid hemorrhage model

    The phagocytosis and homeostasis of microglia play an important role in promoting blood clearance and improving prognosis after subarachnoid hemorrhage (SAH). LC3-assocaited phagocytosis (LAP) contributes to t...

    **ang-**n Chen, Tao Tao, Xun-Zhi Liu, Wei Wu in Cell Communication and Signaling (2023)

  12. Article

    Biomarkers of aging

    Aging biomarkers are a combination of biological parameters to (i) assess age-related changes, (ii) track the physiological aging process, and (iii) predict the transition into a pathological status. Although ...

    Hainan Bao, Jiani Cao, Mengting Chen, Min Chen, Wei Chen in Science China Life Sciences (2023)

  13. Article

    Open Access

    Moderate white light exposure enhanced spatial memory retrieval by activating a central amygdala-involved circuit in mice

    Light exposure can profoundly affect neurological functions and behaviors. Here, we show that short-term exposure to moderate (400 lux) white light during Y-maze test promoted spatial memory retrieval and indu...

    MengJuan Shang, MeiLun Shen, RuoTong Xu, **gYu Du, JiMeng Zhang in Communications Biology (2023)

  14. Article

    Chemical composition and therapeutic mechanism of Xuanbai Chengqi Decoction in the treatment of COVID-19 by network pharmacology, molecular docking and molecular dynamic analysis

    Xuanbai Chengqi Decoction (XBCQD), a classic traditional Chinese medicine, has been widely used to treat COVID-19 in China with remarkable curative effect. However, the chemical composition and potential thera...

    Liming Fan, Shuai Feng, Ting Wang, **nli Ding, **nxin An, Zhen Wang in Molecular Diversity (2023)

  15. Article

    Open Access

    Harnessing electromagnetic fields to assist bone tissue engineering

    Bone tissue engineering (BTE) emerged as one of the exceptional means for bone defects owing to it providing mechanical supports to guide bone tissue regeneration. Great advances have been made to facilitate t...

    Hongqi Zhao, Chaoxu Liu, Yang Liu, Qing Ding, Tianqi Wang in Stem Cell Research & Therapy (2023)

  16. Article

    Open Access

    Metavirome of 31 tick species provides a compendium of 1,801 RNA virus genomes

    The increasing prevalence and expanding distribution of tick-borne viruses globally have raised health concerns, but the full repertoire of the tick virome has not been assessed. We sequenced the meta-transcri...

    Xue-Bing Ni, **ao-Ming Cui, **-Yue Liu, Run-Ze Ye, Yu-Qian Wu in Nature Microbiology (2023)

  17. Article

    Open Access

    Structural insights into a shared mechanism of human STING activation by a potent agonist and an autoimmune disease-associated mutation

    Stimulator of interferon gene (STING) is increasingly exploited for the potential in cancer immunotherapy, yet its mechanism of activation remains not fully understood. Herein, we designed a novel STING agonis...

    Zuoquan **e, Zhen Wang, Fengying Fan, **pei Zhou, Zhaoxue Hu in Cell Discovery (2022)

  18. Article

    Open Access

    Intercellular transfer of activated STING triggered by RAB22A-mediated non-canonical autophagy promotes antitumor immunity

    STING, an endoplasmic reticulum (ER) transmembrane protein, mediates innate immune activation upon cGAMP stimulation and is degraded through autophagy. Here, we report that activated STING could be transferred...

    Ying Gao, Xue** Zheng, Boyang Chang, Yujie Lin, **aodan Huang, Wen Wang in Cell Research (2022)

  19. Article

    Open Access

    METTL1 drives tumor progression of bladder cancer via degrading ATF3 mRNA in an m7G-modified miR-760-dependent manner

    7-methylguanosine (m7G) modification is recently found to conservatively exist in RNA internal position besides mRNA caps and mediates the various RNA metabolisms. As the core confirmed transmethylase of m7G modi...

    Haiyun **e, Mingchao Wang, Haifeng Yu, Huan Wang, Lifeng Ding in Cell Death Discovery (2022)

  20. Article

    Open Access

    Genome-wide association study uncovers major genetic loci associated with flowering time in response to active accumulated temperature in wild soybean population

    Flowering time and active accumulated temperature (AAT) are two key factors that limit the expanded production especially for soybean across different regions. Wild soybean provides an important germplasm for ...

    Guang Yang, Wei Li, Chao Fan, Miao Liu, Jianxin Liu, Wenwei Liang in BMC Genomics (2022)

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