21 Result(s)
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**aoyuan **a
Life Sciences
Life Sciences, general
Plant Genetics and Genomics
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Article
Open AccessRecurrent neural network for predicting absence of heterozygosity from low pass WGS with ultra-low depth
The absence of heterozygosity (AOH) is a kind of genomic change characterized by a long contiguous region of homozygous alleles in a chromosome, which may cause human genetic disorders. However, no method of l...
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Article
Open AccessComparative analysis of POD genes and their expression under multiple hormones in Pyrus bretschenedri
Class III peroxidase (POD) enzymes play vital roles in plant development, hormone signaling, and stress responses. Despite extensive research on POD families in various plant species, the knowledge regarding t...
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Article
Open AccessData notes on the proteomics of Dendrobium huoshanense under pb treatment
Pb stress has a negative impact on plant growth by interfering with photosynthesis and releasing reactive oxygen species, causing major risks such as heavy metal ion accumulation in the soil matrix. A proteomi...
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Article
Open AccessLong-read sequencing reveals the structural complexity of genomic integration of HPV DNA in cervical cancer cell lines
Cervical cancer (CC) causes more than 311,000 deaths annually worldwide. The integration of human papillomavirus (HPV) is a crucial genetic event that contributes to cervical carcinogenesis. Despite HPV DNA in...
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Open AccessGenomic characterization of Listeria monocytogenes and Listeria innocua isolated from milk and dairy samples in Ethiopia
Listeriosis caused by Listeria monocytogenes often poses a significant threat to vulnerable populations. Dairy products have been implicated in outbreaks of listeriosis worldwide. In Ethiopia, studies have identi...
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Article
Open AccessA novel SNP in NKX1-2 gene is associated with carcass traits in Dezhou donkey
At present, donkey meat in the market shows an imbalance between supply and demand, and there is an urgent need to cultivate a meat-type Dezhou donkey breed. On the one hand, it can improve the imbalance in th...
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Article
Open AccessIdentification of BBX gene family and its function in the regulation of microtuber formation in yam
BBX proteins play important roles in all of the major light-regulated developmental processes. However, no systematic analysis of BBX gene family regarding the regulation of photoperiodic microtuber formation has...
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Open AccessIdentification of lncRNA, miRNA and mRNA expression profiles and ceRNA Networks in small cell lung cancer
Small cell lung cancer (SCLC) is a highly lethal malignant tumor. It accounts for approximately 15% of newly diagnosed lung cancers. Long non-coding RNAs (lncRNAs) can regulate gene expression and contribute t...
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Open AccessPolymorphism detection of PRKG2 gene and its association with the number of thoracolumbar vertebrae and carcass traits in Dezhou donkey
Previous studies have shown that the protein kinase cGMP-dependent 2 (PRKG2) gene is associated with dwarfism in humans, dogo Argentines, and Angus cattle, as well as with height and osteoblastogenesis in humans....
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Article
Open AccessIdentification of hub genes and pathways in colitis-associated colon cancer by integrated bioinformatic analysis
Colitis-associated colon cancer (CAC) patients have a younger age of onset, more multiple lesions and invasive tumors than sporadic colon cancer patients. Early detection of CAC using endoscopy is challenging,...
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Open AccessTranscriptome profiling of Malus sieversii under freezing stress after being cold-acclimated
Freezing temperatures are an abiotic stress that has a serious impact on plant growth and development in temperate regions and even threatens plant survival. The wild apple tree (Malus sieversii) needs to undergo...
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Article
Open AccessFunctional examination of lncRNAs in allotetraploid Gossypium hirsutum
An evolutionary model using diploid and allotetraploid cotton species identified 80 % of non-coding transcripts in allotetraploid cotton as being uniquely activated in comparison with its diploid ancestors. Th...
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Article
Open AccessPacBio full-length transcriptome of wild apple (Malus sieversii) provides insights into canker disease dynamic response
Valsa canker is a serious disease in the stem of Malus sieversii, caused by Valsa mali. However, little is known about the global response mechanism in M. sieversii to V. mali infection.
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Open AccessIdentification and expression analysis of GRAS transcription factors in the wild relative of sweet potato Ipomoea trifida
GRAS gene is an important transcription factor gene family that plays a crucial role in plant growth, development, adaptation to adverse environmental condition. Sweet potato is an important food, vegetable, indu...
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Open AccessComparative transcriptional analysis of Capsicum flower buds between a sterile flower pool and a restorer flower pool provides insight into the regulation of fertility restoration
Cytoplasmic male sterility (CMS) and its restoration of fertility (Rf) system is an important mechanism to produce F1 hybrid seeds. Understanding the interaction that controls restoration at a molecular level wil...
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Open AccessGenome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida
The basic leucine zipper (bZIP) transcription factor is one of the most abundant and conserved transcription factor families. In addition to being involved in growth and development, bZIP transcription factors...
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Article
Open AccessLandscape of transcriptional deregulation in lung cancer
Lung cancer is a very heterogeneous disease that can be pathologically classified into different subtypes including small-cell lung carcinoma (SCLC), lung adenocarcinoma (LUAD), lung squamous cell carcinoma (L...
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Open AccessDe novo transcriptome characterization and gene expression profiling of the desiccation tolerant moss Bryum argenteum following rehydration
The desiccation-tolerant moss Bryum argenteum is an important component of the Biological Soil Crusts (BSCs) found in the Gurbantunggut desert. Desiccation tolerance is defined as the ability to revive from the a...
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Open AccessGlobal epigenomic analysis indicates that Epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice
For heterozygous genes, alleles on the chromatin from two different parents exhibit histone modification variations known as allele-specific histone modifications (ASHMs). The regulation of allele-specific gen...
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Open AccessThe phenotypic predisposition of the parent in F1 hybrid is correlated with transcriptome preference of the positive general combining ability parent
Sprague and Tatum (1942) introduced the concepts of general combining ability (GCA) and specific combining ability (SCA) to evaluate the breeding parents and F1 hybrid performance, respectively. Since then, th...
