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Article
Open AccessTranscriptome analysis of avian reovirus-mediated changes in gene expression of normal chicken fibroblast DF-1 cells
Avian reovirus (ARV) is an important poultry pathogen that can cause immunosuppression. In this study, RNA-Seq technology was applied to investigate the transcriptome-wide changes of DF-1 cells upon ARV infect...
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Article
Genetic architecture of flag leaf length and width in rice (Oryza sativa L.) revealed by association map**
Rice flag leaf is the main photosynthetic organ and plays a key role in grain yield. In this study, 106 loci associated with flag leaf length and width were identified using association map** in a rice mini ...
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Article
Open AccessTangram: a comprehensive toolbox for mobile element insertion detection
Mobile elements (MEs) constitute greater than 50% of the human genome as a result of repeated insertion events during human genome evolution. Although most of these elements are now fixed in the population, so...
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Article
Open AccessCopy Number Variation detection from 1000 Genomes project exon capture sequencing data
DNA capture technologies combined with high-throughput sequencing now enable cost-effective, deep-coverage, targeted sequencing of complete exomes. This is well suited for SNP discovery and genoty**. However...
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Article
Open AccessCOMIT: identification of noncoding motifs under selection in coding sequences
Coding nucleotide sequences contain myriad functions independent of their encoded protein sequences. We present the COMIT algorithm to detect functional noncoding motifs in coding regions using sequence conser...
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Article
Modification of the full-length cDNA clone of Newcastle disease virus isolated from an outbreak in the goose
A 6.5-kb specific fragment containing the T7 promoter and the transcription vector was excised from the full-length cDNA clone of the Newcastle disease virus (NDV) strain ZJI of goose origin, and thereafter it...