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  1. Article

    Open Access

    Metabolic network analysis of pre-ASD newborns and 5-year-old children with autism spectrum disorder

    Classical metabolomic and new metabolic network methods were used to study the developmental features of autism spectrum disorder (ASD) in newborns (n = 205) and 5-year-old children (n = 53). Eighty percent of th...

    Sai Sachin Lingampelly, Jane C. Naviaux, Luke S. Heuer in Communications Biology (2024)

  2. No Access

    Article

    Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity

    Mosquito transmitted viruses are responsible for an increasing burden of human disease. Despite this, little is known about the diversity and ecology of viruses within individual mosquito hosts. Here, using a ...

    Yuan-Fei Pan, Hailong Zhao, Qin-Yu Gou, Pei-Bo Shi in Nature Ecology & Evolution (2024)

  3. Article

    Open Access

    Comparative and phylogenetic analysis of Chiloschista (Orchidaceae) species and DNA barcoding investigation based on plastid genomes

    Chiloschista (Orchidaceae, Aeridinae) is an epiphytic leafless orchid that is mainly distributed in tropical or subtropical forest canopies. This rare and threatened orchid lacks molecular resources for phylogene...

    Ding-Kun Liu, Cheng-Yuan Zhou, **ong-De Tu, Zhuang Zhao, **-Liao Chen in BMC Genomics (2023)

  4. No Access

    Article

    A comprehensive analysis of the Bencao (herbal) small RNA Atlas reveals novel RNA therapeutics for treating human diseases

    Cross-kingdom herbal miRNA was first reported in 2012. Using a modified herbal extraction protocol, we obtained 73,677,287 sequences by RNA-seq from 245 traditional Chinese Medicine (TCM), of which 20,758,257 ...

    Yinghao Cao, Yexuan Lin, Na Sun, **nyi Du, Yixin Dong in Science China Life Sciences (2023)

  5. No Access

    Article

    Plastid-localized amino acid metabolism coordinates rice ammonium tolerance and nitrogen use efficiency

    Ammonium toxicity affecting plant metabolism and development is a worldwide problem impeding crop production. Remarkably, rice (Oryza sativa L.) favours ammonium as its major nitrogen source in paddy fields. We s...

    Yuanming **e, Yuanda Lv, Letian Jia, Lulu Zheng, Yonghui Li, Ming Zhu in Nature Plants (2023)

  6. Article

    Open Access

    Generation of nanobodies acting as silent and positive allosteric modulators of the α7 nicotinic acetylcholine receptor

    The α7 nicotinic acetylcholine receptor (nAChR), a potential drug target for treating cognitive disorders, mediates communication between neuronal and non-neuronal cells. Although many competitive antagonists,...

    Qimeng Li, Ákos Nemecz, Gabriel Aymé in Cellular and Molecular Life Sciences (2023)

  7. Article

    Open Access

    A proteome-scale map of the SARS-CoV-2–human contactome

    Understanding the mechanisms of coronavirus disease 2019 (COVID-19) disease severity to efficiently design therapies for emerging virus variants remains an urgent challenge of the ongoing pandemic. Infection a...

    Dae-Kyum Kim, Benjamin Weller, Chung-Wen Lin, Dayag Sheykhkarimli in Nature Biotechnology (2023)

  8. No Access

    Article

    The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

    Euphyllophytes encompass almost all extant plants, including two sister clades, ferns and seed plants. Decoding genomes of ferns is the key to deep insight into the origin of euphyllophytes and the evolution o...

    Yuhan Fang, **ng Qin, Qinggang Liao, Ran Du, **zhi Luo, Qian Zhou, Zhen Li in Nature Plants (2022)

  9. Article

    Open Access

    Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140

    SP140 is a bromodomain-containing protein expressed predominantly in immune cells. Genetic polymorphisms and epigenetic modifications in the SP140 locus have been linked to Crohn’s disease (CD), suggesting a role...

    Mohammed Ghiboub, Jan Koster, Peter D. Craggs, Andrew Y. F. Li Yim in BMC Biology (2022)

  10. No Access

    Article

    Pelagic cyanobacterial nitrogen fixation in lakes and ponds of different latitudinal zones

    Excess nitrogen (N) loading is one of the main factors causing eutrophication. Biological N fixation (BNF), as a main contributor to N loading, plays a critical role in the N cycle. The N2 fixation rate (N2fix) i...

    Yan Li, Ye-**n Yu, Shuo-Nan Ma, Rui-Ting Qiao, Yong-De Cui in Aquatic Sciences (2022)

  11. No Access

    Article

    Sparse deconvolution improves the resolution of live-cell super-resolution fluorescence microscopy

    A main determinant of the spatial resolution of live-cell super-resolution (SR) microscopes is the maximum photon flux that can be collected. To further increase the effective resolution for a given photon flu...

    Weisong Zhao, Shiqun Zhao, Liuju Li, **aoshuai Huang, Shijia **ng in Nature Biotechnology (2022)

  12. Article

    Open Access

    Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

    To improve our understanding of the origin and evolution of mycoheterotrophic plants, we here present the chromosome-scale genome assemblies of two sibling orchid species: partially mycoheterotrophic Platanthera ...

    Ming-He Li, Ke-Wei Liu, Zhen Li, Hsiang-Chia Lu, Qin-Liang Ye in Nature Plants (2022)

  13. Article

    Open Access

    T cells targeted to TdT kill leukemic lymphoblasts while sparing normal lymphocytes

    Unlike chimeric antigen receptors, T-cell receptors (TCRs) can recognize intracellular targets presented on human leukocyte antigen (HLA) molecules. Here we demonstrate that T cells expressing TCRs specific fo...

    Muhammad Ali, Eirini Giannakopoulou, Yingqian Li in Nature Biotechnology (2022)

  14. No Access

    Article

    FGFR-inhibitor-mediated dismissal of SWI/SNF complexes from YAP-dependent enhancers induces adaptive therapeutic resistance

    How cancer cells adapt to evade the therapeutic effects of drugs targeting oncogenic drivers is poorly understood. Here we report an epigenetic mechanism leading to the adaptive resistance of triple-negative b...

    Yihao Li, **ntao Qiu, **aoqing Wang, Hui Liu, Renee C. Geck in Nature Cell Biology (2021)

  15. Article

    Open Access

    Wolfberry genomes and the evolution of Lycium (Solanaceae)

    Wolfberry Lycium, an economically important genus of the Solanaceae family, contains approximately 80 species and shows a fragmented distribution pattern among the Northern and Southern Hemispheres. Although seve...

    You-Long Cao, Yan-long Li, Yun-Fang Fan, Zhen Li, Kouki Yoshida in Communications Biology (2021)

  16. No Access

    Article

    Dissecting the initiation of female meiosis in the mouse at single-cell resolution

    Meiosis is one of the most finely orchestrated events during gametogenesis with distinct developmental patterns in males and females. However, the molecular mechanisms involved in this process remain not well ...

    Wei Ge, Jun-Jie Wang, Rui-Qian Zhang, Shao-**g Tan in Cellular and Molecular Life Sciences (2021)

  17. No Access

    Article

    Genome-wide association study identifies 48 common genetic variants associated with handedness

    Handedness has been extensively studied because of its relationship with language and the over-representation of left-handers in some neurodevelopmental disorders. Using data from the UK Biobank, 23andMe and t...

    Gabriel Cuellar-Partida, Joyce Y. Tung, Nicholas Eriksson in Nature Human Behaviour (2021)

  18. Article

    Open Access

    Roadmap for naming uncultivated Archaea and Bacteria

    The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea and Bacteria, bringing with it a need t...

    Alison E. Murray, John Freudenstein, Simonetta Gribaldo in Nature Microbiology (2020)

  19. No Access

    Article

    Two new species of Encyrtidae (Hymenoptera: Chalcidoidea) from China, parasitoid of Antecerococcus roseus (Green) (Hemiptera: Cerococcidae) on Boehmeria nivea (L.) Gaud

    Two new species of Encyrtidae (Hymenoptera: Chalcidoidea), Microterys perlucidus Zu sp. nov. and Metaphycus roseus Zu sp. nov., are described from China as parasitoids of Antecerococcus roseus (Green) (Hemiptera:...

    Guo-Hao Zu, Ze-Ning Yang, **n-Sheng Cao, Yuan-Hong Wang, Cheng-De Li in Phytoparasitica (2020)

  20. No Access

    Article

    COSY catalyses transcis isomerization and lactonization in the biosynthesis of coumarins

    Coumarins, also known as 1,2-benzopyrones, comprise a large class of secondary metabolites that are ubiquitously found throughout the plant kingdom. In many plant species, coumarins are particularly important ...

    Ruben Vanholme, Lisa Sundin, Keletso Carol Seetso, Hoon Kim, **nyu Liu in Nature Plants (2019)

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