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  1. Article

    Open Access

    Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography

    The conformational dynamics of nucleosome arrays generate a diverse spectrum of microscopic states, posing challenges to their structural determination. Leveraging cryogenic electron tomography (cryo-ET), we d...

    Meng Zhang, César Díaz-Celis, Jianfang Liu, **hui Tao in Nature Communications (2024)

  2. Article

    Open Access

    Selective production of methylindan and tetralin with xylose or hemicellulose

    Indan and tetralin are widely used as fuel additives and the intermediates in the manufacture of thermal-stable jet fuel, many chemicals, medicines, and shockproof agents for rubber industry. Herein, we disclo...

    Zhufan Zou, Zhenjie Yu, Weixiang Guan, Yanfang Liu, Yumin Yao in Nature Communications (2024)

  3. Article

    Open Access

    Impact of industrial robots on environmental pollution: evidence from China

    The application of industrial robots is considered a significant factor affecting environmental pollution. Selecting industrial wastewater discharge, industrial SO2 emissions and industrial soot emissions as the ...

    Yanfang Liu in Scientific Reports (2023)

  4. Article

    Open Access

    Characteristics and risk of interstitial lung disease in dermatomyositis and polymyositis: a retrospective cohort study in Japan

    Dermatomyositis and polymyositis are rare, idiopathic inflammatory myopathies. Interstitial lung disease is one of the most common and potentially severe extra-muscular manifestations of dermatomyositis and po...

    Qingqing Hu, Kuan-Chih Huang, Choo Hua Goh, Yumi Tsuchiya in Scientific Reports (2023)

  5. Article

    Open Access

    Facile hermetic TEM grid preparation for molecular imaging of hydrated biological samples at room temperature

    Although structures of vitrified supramolecular complexes have been determined at near-atomic resolution, elucidating in situ molecular structure in living cells remains a challenge. Here, we report a straight...

    Lingli Kong, Jianfang Liu, Meng Zhang, Zhuoyang Lu, Han Xue in Nature Communications (2023)

  6. No Access

    Article

    Open-channel metal particle superlattices

    Although tremendous advances have been made in preparing porous crystals from molecular precursors1,2, there are no general ways of designing and making topologically diversified porous colloidal crystals over th...

    Yuanwei Li, Wenjie Zhou, Ibrahim Tanriover, Wisnu Hadibrata in Nature (2022)

  7. Article

    Open Access

    A population-based cohort study of the epidemiology of light-chain amyloidosis in Taiwan

    The incidence rate of AL (light-chain) amyloidosis is not known in Asia. We conducted a retrospective cohort study using the Taiwan National Healthcare Insurance Research database and Death Registry to estimat...

    Hsin-An Hou, Chao-Hsiun Tang, Choo Hua Goh, Shih-Pei Shen in Scientific Reports (2022)

  8. No Access

    Article

    Strong yet ductile nanolamellar high-entropy alloys by additive manufacturing

    Additive manufacturing produces net-shaped components layer by layer for engineering applications17. The additive manufacture of metal alloys by laser powder bed fusion (L-PBF) involves large temperature gradien...

    Jie Ren, Yin Zhang, Dexin Zhao, Yan Chen, Shuai Guan, Yanfang Liu, Liang Liu in Nature (2022)

  9. Article

    Open Access

    Memory load differentially influences younger and older users’ learning curve of touchscreen gestures

    In this study, we employed a recall test to investigate how memory load affects the learning curve of gesture-letter pairs for younger and older users. The gesture-letter pairs were carefully designed to mimic...

    Bingxin Li, Tong Yang, Yanfang Liu, Feng Du in Scientific Reports (2022)

  10. Article

    Open Access

    Retraction Note: HMGB1 Facilitated Macrophage Reprogramming towards a Proinflammatory M1-like Phenotype in Experimental Autoimmune Myocarditis Development

    Zhaoliang Su, Pan Zhang, Ying Yu, Hongxiang Lu, Yanfang Liu, ** Ni in Scientific Reports (2022)

  11. Article

    Open Access

    Designed and biologically active protein lattices

    Versatile methods to organize proteins in space are required to enable complex biomaterials, engineered biomolecular scaffolds, cell-free biology, and hybrid nanoscale systems. Here, we demonstrate how the tai...

    Shih-Ting Wang, Brian Minevich, Jianfang Liu, Honghu Zhang in Nature Communications (2021)

  12. Article

    Open Access

    A comprehensive retrospective cohort study of the journey of B-cell lymphoma in Taiwan

    Complete disease journey and risk factors for poor outcomes are needed to facilitate effectiveness evaluations of new therapies and clinical decision-making in B-cell Non-Hodgkin lymphoma (B-NHL), particularly...

    Sung-Nan Pei, Ming-Chung Wang, Ming-Chun Ma, Ching-Yuan Kuo in Scientific Reports (2021)

  13. Article

    Open Access

    Treatment pathways and disease journeys differ before and after introduction of novel agents in newly diagnosed multiple myeloma in Taiwan

    Limited real-world data are available regarding treatment practices and outcomes of multiple myeloma (MM) in Asia. We conducted a retrospective cohort study using the Taiwan National Healthcare Insurance Resea...

    Yanfang Liu, Chao-Hsiun Tang, Hong Qiu, Sarah Siggins, Hsin-An Hou in Scientific Reports (2021)

  14. Article

    Open Access

    Is the risk of second primary malignancy increased in multiple myeloma in the novel therapy era? A population-based, retrospective cohort study in Taiwan

    Longer survival in patients with multiple myeloma (MM) after treatment with novel agents (NA) such as thalidomide, bortezomib, and lenalidomide may be associated with increased risks of develo** second prima...

    Yanfang Liu, Hsin-An Hou, Hong Qiu, Chao-Hsiun Tang in Scientific Reports (2020)

  15. Article

    Open Access

    Mutational spectrum and prognosis in NRAS-mutated acute myeloid leukemia

    The mutational spectrum and prognostic factors of NRAS-mutated (NRASmut) acute myeloid leukemia (AML) are largely unknown. We performed next-generation sequencing (NGS) in 1,149 cases of de novo AML and discovere...

    Shujuan Wang, Zhenzhen Wu, Tao Li, Yafei Li, Weiqiong Wang in Scientific Reports (2020)

  16. Article

    Open Access

    LoTToR: An Algorithm for Missing-Wedge Correction of the Low-Tilt Tomographic 3D Reconstruction of a Single-Molecule Structure

    A single-molecule three-dimensional (3D) structure is essential for understanding the thermal vibrations and dynamics as well as the conformational changes during the chemical reaction of macromolecules. Indiv...

    **aobo Zhai, Dongsheng Lei, Meng Zhang, Jianfang Liu, Hao Wu in Scientific Reports (2020)

  17. Article

    Open Access

    The integration of metabolome and proteome reveals bioactive polyphenols and hispidin in ARTP mutagenized Phellinus baumii

    Phellinus baumii, also called “Sang Huang” in China, is broadly used as a kind of health food or folk medicine in Asia for its high biological activities, e.g. anti-tumor, anti-oxidation and anti-inflammatory act...

    Henan Zhang, Ruibing Chen, **gsong Zhang, Qitao Bu, Wenhan Wang in Scientific Reports (2019)

  18. Article

    Open Access

    Single-Molecule 3D Images of “Hole-Hole” IgG1 Homodimers by Individual-Particle Electron Tomography

    The engineering of immunoglobulin-G molecules (IgGs) is of wide interest for improving therapeutics, for example by modulating the activity or multiplexing the specificity of IgGs to recognize more than one an...

    Dongsheng Lei, Jianfang Liu, Hongbin Liu, Thomas E. Cleveland IV in Scientific Reports (2019)

  19. Article

    Open Access

    PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subty** reclassifying a subset of luminal A tumors as luminal B

    The PAM50 classifier is widely used for breast tumor intrinsic subty** based on gene expression. Clinical subty**, however, is based on immunohistochemistry assays of 3–4 biomarkers. Subtype calls by these...

    Praveen-Kumar Raj-Kumar, Jianfang Liu, Jeffrey A. Hooke in Scientific Reports (2019)

  20. Article

    Open Access

    An Algorithm for Enhancing the Image Contrast of Electron Tomography

    Three-dimensional (3D) reconstruction of a single protein molecule is essential for understanding the relationship between the structural dynamics and functions of the protein. Electron tomography (ET) provide...

    Hao Wu, **aobo Zhai, Dongsheng Lei, Jianfang Liu, Yadong Yu in Scientific Reports (2018)

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