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  1. Protocol

    Adaptive Immune Receptor Repertoire (AIRR) Community Guide to Repertoire Analysis

    Adaptive immune receptor repertoires (AIRRs) are rich with information that can be mined for insights into the workings of the immune system. Gene usage, CDR3 properties, clonal lineage structure, and sequence...

    Susanna Marquez, Lmar Babrak, Victor Greiff, Kenneth B. Hoehn in Immunogenetics (2022)

  2. Protocol

    Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation

    High-throughput sequencing of adaptive immune receptor repertoires (AIRR, i.e., IG and TR) has revolutionized the ability to carry out large-scale experiments to study the adaptive immune response. Since the m...

    Lmar Babrak, Susanna Marquez, Christian E. Busse, William D. Lees in Immunogenetics (2022)

  3. Protocol

    Bulk gDNA Sequencing of Antibody Heavy-Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community

    In this method we illustrate how to amplify, sequence, and analyze antibody/immunoglobulin (IG) heavy-chain gene rearrangements from genomic DNA that is derived from bulk populations of cells by next-generatio...

    Aaron M. Rosenfeld, Wenzhao Meng, Kalisse I. Horne, Elaine C. Chen in Immunogenetics (2022)