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Chapter
Cross-Linking Mass Spectrometry Data Analysis
In this chapter, we will review mass spectrometry-based proteomics and focus on the development of data analysis methods in chemical cross-linking combined with mass spectrometry (CL-MS). CL-MS is one remarkab...
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Chapter
Bioinformatic Analysis of Data Generated from MALDI Mass Spectrometry for Biomarker Discovery
In this chapter we first describe the applications of matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS) in biomarker discovery. After a summary of the general analysis pipeline of MALD...
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Chapter and Conference Paper
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification
In current proteome research, the most widely used method for protein mixture identification is probably peptide sequencing. Peptide sequencing is based on tandem Mass Spectrometry (MS/MS) data. The disadvanta...
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Chapter and Conference Paper
Motion Analysis of 3D Ultrasound Texture Patterns
We model the process of imaging soft tissues with a 3D ultrasound probe using a linear convolution model, and obtain analytical expressions of both the ultrasound image and its spectrum. We use this model to s...
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Chapter and Conference Paper
Combinative Multi-scale Level Set Framework for Echocardiographic Image Segmentation
In the automatic segmentation of echocardiographic images, a priori shape knowledge is used to compensate poor features in ultrasound images. The shape knowledge is often learned via off-line training process, wh...
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Chapter and Conference Paper
Skewness of Gabor Wavelets and Source Signal Separation
Responses of Gabor wavelets in the mid-frequency space build a local spectral representation scheme with optimal properties regarding the time-frequency uncertainty principle. However, when using Gabor wavelet...
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Chapter and Conference Paper
Eliminating Outliers in Motion Occlusion Analysis
Occlusion boundaries are considered either as outliers or as noise in most optical flow algorithms. In order to treat the boundary problem, many probabilistic algorithms like maximum likelihood [6] or expectat...
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Chapter and Conference Paper
A New 3D Orientation Steerable Filter
In this paper we present a new filter based on Gaussian functions for the extraction of local 3D orientation information. Compared with current 3D steerability approaches our method achieves higher orientation...
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Chapter and Conference Paper
Junction Characterization Using Polar Pyramid
In this paper we present a new approach in characterizing gray-value junctions. Due to the multiple intrinsic orientations present in junctions the response of a filter is needed at every orientation. As a rot...
