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  1. No Access

    Chapter and Conference Paper

    3D Motion Modeling and Reconstruction of Left Ventricle Wall in Cardiac MRI

    The analysis of left ventricle (LV) wall motion is a critical step for understanding cardiac functioning mechanisms and clinical diagnosis of ventricular diseases. We present a novel approach for 3D motion mod...

    Dong Yang, Pengxiang Wu, Chaowei Tan in Functional Imaging and Modelling of the He… (2017)

  2. Chapter and Conference Paper

    Joint Data Harmonization and Group Cardinality Constrained Classification

    To boost the power of classifiers, studies often increase the size of existing samples through the addition of independently collected data sets. Doing so requires harmonizing the data for demographic and acqu...

    Yong Zhang, Sang Hyun Park, Kilian M. Pohl in Medical Image Computing and Computer-Assis… (2016)

  3. Chapter and Conference Paper

    Solving Logistic Regression with Group Cardinality Constraints for Time Series Analysis

    We propose an algorithm to distinguish 3D+t images of healthy from diseased subjects by solving logistic regression based on cardinality constrained, group sparsity. This method reduces the risk of overfitting...

    Yong Zhang, Kilian M. Pohl in Medical Image Computing and Computer-Assis… (2015)

  4. Chapter and Conference Paper

    FLOOR: Fusing Locally Optimal Registrations

    Most registration algorithms, such as Demons [1], align two scans by iteratively finding the deformation minimizing the image dissimilarity at each location and smoothing this minimum across the image domain. ...

    Dong Hye Ye, Jihun Hamm, Benoit Desjardins in Medical Image Computing and Computer-Assis… (2013)

  5. Chapter and Conference Paper

    Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models

    Organ segmentation is a challenging problem on which significant progress has been made. Deformable models (DM) and graphical models (GM) are two important categories of optimization based image segmentation m...

    Mustafa Gökhan Uzunbaş, Chao Chen in Medical Image Computing and Computer-Assis… (2013)

  6. No Access

    Chapter and Conference Paper

    Extracting Evolving Pathologies via Spectral Clustering

    A bottleneck in the analysis of longitudinal MR scans with white matter brain lesions is the temporally consistent segmentation of the pathology. We identify pathologies in 3D+t(ime) within a spectral graph cl...

    Elena Bernardis, Kilian M. Pohl in Information Processing in Medical Imaging (2013)

  7. No Access

    Chapter and Conference Paper

    Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering

    The clustering of fibers into bundles is an important task in studying the structure and function of white matter. Existing technology mostly relies on geometrical features, such as the shape of fibers, and th...

    Birkan Tunç, Alex R. Smith, Demian Wasserman in Information Processing in Medical Imaging (2013)

  8. No Access

    Chapter and Conference Paper

    Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration

    Cross-subject image registration is the building block for many cardiac studies. In the literature, it is often handled by voxel-wise registration methods. However, studies are lacking to show which methods ar...

    Yangming Ou, Dong Hye Ye, Kilian M. Pohl in Biomedical Image Registration (2012)

  9. Chapter and Conference Paper

    Regional Manifold Learning for Deformable Registration of Brain MR Images

    We propose a method for deformable registration based on learning the manifolds of individual brain regions. Recent publications on registration of medical images advocate the use of manifold learning in order...

    Dong Hye Ye, Jihun Hamm, Dong** Kwon in Medical Image Computing and Computer-Assis… (2012)

  10. Chapter and Conference Paper

    Temporal Shape Analysis via the Spectral Signature

    In this paper, we adapt spectral signatures for capturing morphological changes over time. Advanced techniques for capturing temporal shape changes frequently rely on first registering the sequence of shapes a...

    Elena Bernardis, Ender Konukoglu in Medical Image Computing and Computer-Assis… (2012)

  11. Chapter and Conference Paper

    Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model

    This paper presents an approach for joint segmentation and deformable registration of brain scans of glioma patients to a normal atlas. The proposed method is based on the Expectation Maximization (EM) algorit...

    Ali Gooya, Kilian M. Pohl, Michel Bilello in Medical Image Computing and Computer-Assis… (2011)

  12. No Access

    Chapter and Conference Paper

    Morphological Classification: Application to Cardiac MRI of Tetralogy of Fallot

    This paper presents an image-based classification method, and applies it to classification of cardiac MRI scans of individuals with Tetralogy of Fallot (TOF). Clinicians frequently diagnose cardiac disease by ...

    Dong Hye Ye, Harold Litt in Functional Imaging and Modeling of the Hea… (2011)

  13. No Access

    Chapter and Conference Paper

    A Unified Framework for MR Based Disease Classification

    In this paper, we employ an anatomical parameterization of spatial warps to reveal structural differences between medical images of healthy control subjects and disease patients. The warps are represented as s...

    Kilian M. Pohl, Mert R. Sabuncu in Information Processing in Medical Imaging (2009)

  14. No Access

    Chapter and Conference Paper

    Active Mean Fields: Solving the Mean Field Approximation in the Level Set Framework

    We describe a new approach for estimating the posterior probability of tissue labels. Conventional likelihood models are combined with a curve length prior on boundaries, and an approximate posterior distribut...

    Kilian M. Pohl, Ron Kikinis, William M. Wells in Information Processing in Medical Imaging (2007)

  15. Chapter and Conference Paper

    Logarithm Odds Maps for Shape Representation

    The concept of the Logarithm of the Odds (LogOdds) is frequently used in areas such as artificial neural networks, economics, and biology. Here, we utilize LogOdds for a shape representation that demonstrates ...

    Kilian M. Pohl, John Fisher, Martha Shenton in Medical Image Computing and Computer-Assis… (2006)

  16. No Access

    Chapter and Conference Paper

    Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images

    Standard image based segmentation approaches perform poorly when there is little or no contrast along boundaries of different regions. In such cases, segmentation is largely performed manually using prior know...

    Kilian M. Pohl, John Fisher, Ron Kikinis in Computer Vision for Biomedical Image Appli… (2005)

  17. Chapter and Conference Paper

    A Unifying Approach to Registration, Segmentation, and Intensity Correction

    We present a statistical framework that combines the registration of an atlas with the segmentation of magnetic resonance images. We use an Expectation Maximization-based algorithm to find a solution within th...

    Kilian M. Pohl, John Fisher, James J. Levitt in Medical Image Computing and Computer-Assis… (2005)

  18. Chapter and Conference Paper

    Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images

    The paper introduces an algorithm which allows the automatic segmentation of multi channel magnetic resonance images. We extended the Expectation Maximization-Mean Field Approximation Segmenter, to include Loc...

    Kilian M. Pohl, William M. Wells in Medical Image Computing and Computer-Assis… (2002)