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  1. Article

    Open Access

    Overview of BioCreative II gene normalization

    The goal of the gene normalization task is to link genes or gene products mentioned in the literature to biological databases. This is a key step in an accurate search of the biological literature. It is a cha...

    Alexander A Morgan, Zhiyong Lu, **nglong Wang, Aaron M Cohen… in Genome Biology (2008)

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  2. Article

    Open Access

    Concept recognition for extracting protein interaction relations from biomedical text

    Reliable information extraction applications have been a long sought goal of the biomedical text mining community, a goal that if reached would provide valuable tools to benchside biologists in their increasin...

    William A Baumgartner Jr, Zhiyong Lu, Helen L Johnson, J Gregory Caporaso… in Genome Biology (2008)

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  3. Article

    Open Access

    Tracking human genes along the translational continuum

    Understanding the drivers of research on human genes is a critical component to success of translation efforts of genomics into medicine and public health. Using publicly available curated online databases we ...

    Kyubum Lee, Mindy Clyne, Wei Yu, Zhiyong Lu, Muin J. Khoury in npj Genomic Medicine (2019)

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  4. No Access

    Article

    Tracking genetic variants in the biomedical literature using LitVar 2.0

    Kee** up with the latest variant-related research is vital for genomic medicine. Here we present LitVar 2.0, a significantly improved web-based system to accurately search for genetic variants in the unstruc...

    Alexis Allot, Chih-Hsuan Wei, Lon Phan, Timothy Hefferon… in Nature Genetics (2023)