Skip to main content

and
  1. Article

    Open Access

    Author Correction: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

    Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao in Nature Communications (2023)

  2. Article

    Open Access

    Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data

    Routine tumor-node-metastasis (TNM) staging of colorectal cancer is imperfect in predicting survival due to tumor pathobiological heterogeneity and imprecise assessment of tumor spread. We leveraged Bayesian a...

    Melissa Zhao, Mai Chan Lau, Koichiro Haruki, Juha P. Väyrynen in npj Precision Oncology (2023)

  3. Article

    Open Access

    Spatially resolved multimarker evaluation of CD274 (PD-L1)/PDCD1 (PD-1) immune checkpoint expression and macrophage polarisation in colorectal cancer

    The CD274 (PD-L1)/PDCD1 (PD-1) immune checkpoint interaction may promote cancer progression, but the expression patterns and prognostic significance of PD-L1 and PD-1 in the colorectal cancer microenvironment ...

    Hanna Elomaa, Maarit Ahtiainen, Sara A. Väyrynen, Shuji Ogino in British Journal of Cancer (2023)

  4. Article

    Open Access

    Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients

    Histopathologic assessment is indispensable for diagnosing colorectal cancer (CRC). However, manual evaluation of the diseased tissues under the microscope cannot reliably inform patient prognosis or genomic v...

    Pei-Chen Tsai, Tsung-Hua Lee, Kun-Chi Kuo, Fang-Yi Su in Nature Communications (2023)

  5. Article

    Open Access

    Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

    Spatially resolved transcriptomics involves a set of emerging technologies that enable the transcriptomic profiling of tissues with the physical location of expressions. Although a variety of methods have been...

    Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao in Nature Communications (2023)

  6. Article

    Open Access

    Smoking and colorectal cancer survival in relation to tumor LINE-1 methylation levels: a prospective cohort study

    Carcinogens in cigarette smoke may cause aberrant epigenomic changes. The hypomethylation of long interspersed nucleotide element-1 (LINE-1) in colorectal carcinoma has been associated with genomic instability...

    Junko Kishikawa, Tomotaka Ugai, Kenji Fujiyoshi, Yang Chen in Epigenetics Communications (2022)

  7. No Access

    Article

    Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer

    Despite heightened interest in early-onset colorectal cancer (CRC) diagnosed before age 50, little is known on immune cell profiles of early-onset CRC. It also remains to be studied whether CRCs diagnosed at o...

    Tomotaka Ugai, Juha P. Väyrynen, Mai Chan Lau in Cancer Immunology, Immunotherapy (2022)

  8. Article

    Open Access

    An integrated analysis of lymphocytic reaction, tumour molecular characteristics and patient survival in colorectal cancer

    Histological lymphocytic reaction is regarded as an independent prognostic marker in colorectal cancer. Considering the lack of adequate statistical power, adjustment for selection bias and comprehensive tumou...

    Koichiro Haruki, Keisuke Kosumi, Peilong Li, Kota Arima in British Journal of Cancer (2020)

  9. Article

    Open Access

    Immunological history governs human stem cell memory CD4 heterogeneity via the Wnt signaling pathway

    The diversity of the naïve T cell repertoire drives the replenishment potential and capacity of memory T cells to respond to immune challenges. Attrition of the immune system is associated with an increased pr...

    Hassen Kared, Shu Wen Tan, Mai Chan Lau, Marion Chevrier in Nature Communications (2020)