Skip to main content

and
  1. Article

    Open Access

    Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models

    The PubMed archive contains more than 34 million articles; consequently, it is becoming increasingly difficult for a biomedical researcher to keep up-to-date with different knowledge domains. Computationally e...

    Robert J. Millikin, Kalpana Raja, John Steill, Cannon Lock in BMC Bioinformatics (2023)

  2. Article

    Open Access

    A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

    The Nile rat (Avicanthis niloticus) is an important animal model because of its robust diurnal rhythm, a cone-rich retina, and a propensity to develop diet-induced diabetes without chemical or genetic modificatio...

    Huishi Toh, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan in BMC Biology (2022)

  3. Article

    Open Access

    Genetic signature to provide robust risk assessment of psoriatic arthritis development in psoriasis patients

    Psoriatic arthritis (PsA) is a complex chronic musculoskeletal condition that occurs in ~30% of psoriasis patients. Currently, no systematic strategy is available that utilizes the differences in genetic archi...

    Matthew T. Patrick, Philip E. Stuart, Kalpana Raja in Nature Communications (2018)

  4. Article

    Open Access

    Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases

    Adverse drug reactions (ADRs) pose critical public health issues, affecting over 6% of hospitalized patients. While knowledge of potential drug-drug interactions (DDI) is necessary to prevent ADR, the rapid pa...

    Kalpana Raja, Matthew Patrick, James T. Elder, Lam C. Tsoi in Scientific Reports (2017)

  5. No Access

    Article

    Atypical Presentation of Gastrointestinal Stromal Tumours—A Case Report

    Gastrointestinal stromal tumors (GISTs) are benign mesenchymal tumors of the gastrointestinal tract (GIT). Their clinical presentations are variable. We report a case of a 31-year-old man who presented with pa...

    Kalpana Raja, Bhawna Dev, Roy Santosham, Joseph Santhosh in Indian Journal of Surgery (2013)