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  1. Article

    Open Access

    Fast and flexible profiling of chromatin accessibility and total RNA expression in single nuclei using Microwell-seq3

    Single cell chromatin accessibility profiling and transcriptome sequencing are the most widely used technologies for single-cell genomics. Here, we present Microwell-seq3, a high-throughput and facile platform...

    Fang Ye, Shuang Zhang, Yuting Fu, Lei Yang, Guodong Zhang, Yijun Wu in Cell Discovery (2024)

  2. Article

    Open Access

    Understanding predictors of mistletoe infection across an urban university campus in Southwest China

    Due to the importance of trees in urban ecosystems, it is crucial to understand the distribution, prevalence, and intensity of parasitic mistletoe infection across urban landscapes. In this study, we aimed to ...

    Yuchen Niu, Benjamin Laffitte, Sophia Zuoqiu, Barnabas C. Seyler in Urban Ecosystems (2024)

  3. Article

    Open Access

    Lysobacter chang**ensis sp. nov., a novel species of the genus Lysobacter isolated from a rhizosphere soil of strawberry in China

    In the present work, we characterized in detail strain CM-3-T8T, which was isolated from the rhizosphere soil of strawberries in Bei**g, China, in order to elucidate its taxonomic position. Cells of strain CM-3-...

    Bang-Yan Niu, Dong-Jun Ren, Fang-Bo Zhang, Hong-Tu Zhu, Hai-Lei Wei in Folia Microbiologica (2023)

  4. Article

    Open Access

    A NAC transcription factor, PpNAC1, regulates the expression of PpMYB10.1 to promote anthocyanin biosynthesis in the leaves of peach trees in autumn

    Red leaves in autumn are characteristic of a very early-maturing ripening variety of peach (Prunus persica). Analysis of the genetic factors and molecular mechanisms associated with the red-leaf phenotype can hel...

    Junren Meng, Shihang Sun, Ang Li, Lei Pan, Wenyi Duan, Guochao Cui in Horticulture Advances (2023)

  5. Article

    Specific pupylation as IDEntity reporter (SPIDER) for the identification of protein-biomolecule interactions

    Protein-biomolecule interactions play pivotal roles in almost all biological processes. For a biomolecule of interest, the identification of the interacting protein(s) is essential. For this need, although man...

    He-Wei Jiang, Hong Chen, Yun-**ao Zheng, Xue-Ning Wang in Science China Life Sciences (2023)

  6. No Access

    Article

    The Arabidopsis SPL9 Transcription Factor Regulates Phosphate Acquisition and miR399f Expression under Phosphate Deprivation

    Transcription factors play an important role in the signaling of Pi deficit. We show that Arabidopsis SPL9 regulates the phosphate (Pi) deficit response. We report here that the SPL9 of Arabidopsis modulates the ...

    K. Lei, J. Ren, M. Niu, D. Gu, G. An in Russian Journal of Plant Physiology (2023)

  7. Article

    Open Access

    Tuning charge density of chimeric antigen receptor optimizes tonic signaling and CAR-T cell fitness

    Tonic signaling of chimeric antigen receptor (CAR), i.e., the spontaneous CAR activation in the absence of tumor antigen stimulation, is considered to be a pivotal event controlling CAR-T efficacy. However, th...

    Jian Chen, Shizhen Qiu, Wentao Li, Kun Wang, Yu Zhang, Han Yang in Cell Research (2023)

  8. No Access

    Article

    Dynamic carbon-nitrogen coupling under global change

    Carbon-nitrogen coupling is a fundamental principle in ecosystem ecology. However, how the coupling responds to global change has not yet been examined. Through a comprehensive and systematic literature review...

    Shuli Niu, Lei Song, **song Wang, Yiqi Luo, Guirui Yu in Science China Life Sciences (2023)

  9. Article

    Open Access

    HOXB3 drives WNT-activation associated progression in castration-resistant prostate cancer

    Enabled resistance or innate insensitiveness to antiandrogen are lethal for castration-resistant prostate cancer (CRPC). Unfortunately, there seems to be little can be done to overcome the antiandrogen resista...

    Shimiao Zhu, Zhao Yang, Zheng Zhang, Hongli Zhang, Songyang Li in Cell Death & Disease (2023)

  10. No Access

    Article

    Characterization and expression analysis of basic leucine zipper (bZIP) transcription factors responsive to chilling injury in peach fruit

    Peach (Prunus persica L.) is prone to chilling injury as exhibited by inhibition of the ethylene production, failure in softening, and the manifestation of internal browning. The basic leucine zipper (bZIP) trans...

    Muhammad Muzammal Aslam, Li Deng, Junren Meng, Yan Wang in Molecular Biology Reports (2023)

  11. No Access

    Article

    5′-Nucleotidase is dispensable for the growth of Salmonella Typhimurium but inhibits the bactericidal activity of macrophage extracellular traps

    Salmonella enterica serovar Typhimurium (S. Typhimurium) is a zoonotic pathogen that causes severe gastroenteritis. The 5′-nucleotidases of pathogens can dephosphorylate adenosine phosphates, boost adenosine leve...

    Man Qian, Ke Xu, Mengke Zhang, Junhui Niu, Tianxiang Zhao in Archives of Microbiology (2022)

  12. Article

    Open Access

    Integration of multi-omics data reveals cis-regulatory variants that are associated with phenotypic differentiation of eastern from western pigs

    The genetic mechanisms that underlie phenotypic differentiation in breeding animals have important implications in evolutionary biology and agriculture. However, the contribution of cis-regulatory variants to ...

    Yuwen Liu, Yang Fu, Yalan Yang, Guoqiang Yi, **min Lian in Genetics Selection Evolution (2022)

  13. No Access

    Article

    Validation of reliable safe harbor locus for efficient porcine transgenesis

    Transgenic technology is now widely used in biomedical and agricultural fields. Transgenesis is commonly achieved through random integration which might cause some uncertain consequences. The site-specific int...

    **ang Ma, Weijun Zeng, Lei Wang, Rui Cheng in Functional & Integrative Genomics (2022)

  14. No Access

    Article

    Protecting mitochondria via inhibiting VDAC1 oligomerization alleviates ferroptosis in acetaminophen-induced acute liver injury

    Acetaminophen (APAP) overdose is a common cause of drug-induced liver injury (DILI). Ferroptosis has been recently implicated in APAP-induced liver injury (AILI). However, the functional role and underlying me...

    Baolin Niu, **aohong Lei, Qingling Xu, Yi Ju, Dongke Xu in Cell Biology and Toxicology (2022)

  15. No Access

    Article

    Stenotrophomonas nematodicola sp. nov., isolated from Caenorhabditis elegans

    A Gram stain-negative, coccoid rod-shaped, motile by gliding, facultatively aerobic bacterium, designated W5, was isolated from Caenorhabditis elegans samples in Baotianman Natural Reserve (33° 27′ 47′′ N; 111° 4...

    Xuyang Wei, Shengwei Lei, Yang Deng, Yuqin Zhang, Lin Zhang in Archives of Microbiology (2021)

  16. No Access

    Article

    Enhanced SA and Ca2+ signaling results in PCD-mediated spontaneous leaf necrosis in wheat mutant wsl

    Leaf is the major photosynthesis organ and the key source of wheat (Triticum aestivum L.) grain. Spotted leaf (spl) mutant is a kind of leaf lesion mimic mutants (LMMs) in plants, which is an ideal material for s...

    Huijuan Li, Zhixin Jiao, Peipei Zhang, Yong**g Ni in Molecular Genetics and Genomics (2021)

  17. Article

    Open Access

    Lactobacillus plantarum surface-displayed ASFV (p54) with porcine IL-21 generally stimulates protective immune responses in mice

    African classical swine fever virus (ASFV) has spread seriously around the world and has dealt with a heavy blow to the pig breeding industry due to the lack of vaccines. In this study, we produced recombinant La...

    **ao-Lei Chen, Jun-Hong Wang, Wei Zhao, Chun-Wei Shi, Kai-Dian Yang in AMB Express (2021)

  18. No Access

    Article

    CBX8 acts as an independent RNA-binding protein to regulate the maturation of miR-378a-3p in colon cancer cells

    CBX8 is the core component of the PCG family protein PRC1 complex. It is overexpressed in many solid tumors and plays an important role in the prognosis and biological behaviors of tumors such as occurrence, d...

    **n Song, Wu Ning, **wei Niu, Guochao Zhang, Haibin Liu, Lei Zhou in Human Cell (2021)

  19. No Access

    Article

    Discovery of a Novel Cysteine Framework XXIV Conotoxin from Conus striatus, S24a, with Potential Analgesic Activity

    A novel conotoxin, S24a, containing 26 amino acid residues was first derived from the cDNA library of Conus striatus. This conotoxin has the same conserved signal peptide as A-superfamily conotoxins and some unco...

    Yuanyuan Qiang, Jianguo Niu, Yun Wu, Zhao Di in International Journal of Peptide Research … (2021)

  20. Article

    Open Access

    The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements

    Tetracentron sinense is an endemic and endangered deciduous tree. It belongs to the Trochodendrales, one of four early diverging lineages of eudicots known for having vesselless secondary wood. Sequencing and res...

    **-Li Liu, ** Zhang, Jian-Feng Mao, Yan-Ming Hong, Ren-Gang Zhang in Genome Biology (2020)

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