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  1. No Access

    Article

    Numerical factorization of a polynomial by rational Hermite interpolation

    We derive a class of iterative formulae to find numerically a factor of arbitrary degree of a polynomialf(x) based on the rational Hermite interpolation. The iterative formula generates the sequence of polynomial...

    Tetsuya Sakurai, Hiroshi Sugiura, Tatsuo Torii in Numerical Algorithms (1992)

  2. No Access

    Article

    On Factorization of Analytic Functions and Its Verification

    An interval method for finding a polynomial factor of an analytic function f(z) is proposed. By using a Samelson-like method recursively, we obtain a sequence of polynomials that converges to a factor p*(z) of f(

    Tetsuya Sakurai, Hiroshi Sugiura in Reliable Computing (2000)

  3. No Access

    Article

    Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

    Motoaki Seki, Junko Ishida, Mari Narusaka, Miki Fujita in Functional & Integrative Genomics (2002)

  4. No Access

    Article

    Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

    Full-length cDNAs are essential for functional analysis of plant genes. Recently, cDNA microarray analysis has been developed for quantitative analysis of global and simultaneous analysis of expression profil...

    Motoaki Seki, Junko Ishida, Mari Narusaka, Miki Fujita in Functional & Integrative Genomics (2002)

  5. No Access

    Article

    A method for finding the zeros of polynomials using a companion matrix

    The zeros of a polynomial can be found by computing the eigenvalues of the corresponding companion matrix. However, in the case of multiple zeros, the calculated results are usually not as accurate as those fo...

    **ao-Ming Niu, Tetsuya Sakurai in Japan Journal of Industrial and Applied Mathematics (2003)

  6. No Access

    Chapter

    Transcriptome analysis in abiotic stress conditions in higher plants

    Drought, high salinity, and low temperature are major environmental factors that limit plant productivity. Plants respond and adapt to these stresses in order to survive. Recent molecular and genetic studies h...

    Motoaki Seki, Ayako Kamei, Masakazu Satou in Plant Responses to Abiotic Stress (2004)

  7. No Access

    Article

    Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray

    Transcriptional regulation in response to hyperosmotic, high-salinity and oxidative stress, and abscisic acid (ABA) treatment in Arabidopsis suspension-cultured cell line T87 was investigated with a cDNA microarr...

    Seiji Takahashi, Motoaki Seki, Junko Ishida, Masakazu Satou in Plant Molecular Biology (2004)

  8. No Access

    Chapter and Conference Paper

    A Parallel Method for Large Sparse Generalized Eigenvalue Problems by OmniRPC in a Grid Environment

    In this paper we present a parallel method for finding several eigenvalues and eigenvectors of a generalized eigenvalue problem A x = λB x, where A and B are ...

    Tetsuya Sakurai, Kentaro Hayakawa in Applied Parallel Computing. State of the A… (2006)

  9. No Access

    Chapter and Conference Paper

    A Hybrid Parallel Method for Large Sparse Eigenvalue Problems on a Grid Computing Environment Using Ninf-G/MPI

    In the present paper, we propose a hybrid parallel method for large sparse eigenvalue problems in a grid computing environment. A moment-based method that finds several eigenvalues and their corresponding eige...

    Tetsuya Sakurai, Yoshihisa Kodaki, Hiroaki Umeda in Large-Scale Scientific Computing (2006)

  10. No Access

    Chapter and Conference Paper

    Performance Improvement by Data Management Layer in a Grid RPC System

    A grid RPC system provides a useful and intuitive programming interface for master-worker type applications in a grid environment. In many grid applications, such as parameter search programs, both master and ...

    Yoshiaki Aida, Yoshihiro Nakajima in Advances in Grid and Pervasive Computing (2006)

  11. Article

    Open Access

    A flexible representation of omic knowledge for thorough analysis of microarray data

    In order to understand microarray data reasonably in the context of other existing biological knowledge, it is necessary to conduct a thorough examination of the data utilizing every aspect of available omic k...

    Yoshikazu Hasegawa, Motoaki Seki, Yoshiki Mochizuki, Naohiko Heida in Plant Methods (2006)

  12. No Access

    Article

    Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays

    A comparative analysis of gene expression profiles during cold acclimation and deacclimation is necessary to elucidate the molecular mechanisms of cold stress responses in higher plants. We analyzed gene expre...

    Youko Oono, Motoaki Seki, Masakazu Satou, Kei Iida in Functional & Integrative Genomics (2006)

  13. No Access

    Chapter and Conference Paper

    A Master-Worker Type Eigensolver for Molecular Orbital Computations

    We consider a parallel method for solving generalized eigenvalue problems that arise from molecular orbital computations. We use a moment-based method that finds several eigenvalues and their corresponding eig...

    Tetsuya Sakurai, Yoshihisa Kodaki in Applied Parallel Computing. State of the A… (2007)

  14. Article

    Open Access

    Identification of plant promoter constituents by analysis of local distribution of short sequences

    Plant promoter architecture is important for understanding regulation and evolution of the promoters, but our current knowledge about plant promoter structure, especially with respect to the core promoter, is ...

    Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata in BMC Genomics (2007)

  15. Article

    Open Access

    Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

    Populus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era...

    Tokihiko Nanjo, Tetsuya Sakurai, Yasushi Totoki, Atsushi Toyoda in BMC Genomics (2007)

  16. Article

    Open Access

    Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response

    Cassava, an allotetraploid known for its remarkable tolerance to abiotic stresses is an important source of energy for humans and animals and a raw material for many industrial processes. A full-length cDNA li...

    Tetsuya Sakurai, Germán Plata, Fausto Rodríguez-Zapata, Motoaki Seki in BMC Plant Biology (2007)

  17. No Access

    Chapter and Conference Paper

    On Single Precision Preconditioners for Krylov Subspace Iterative Methods

    Large sparse linear systems Ax= b arise in many scientific applications. Krylov subspace iterative methods are often used for solving such linear systems. Preconditioning techniques are efficient to reduce the nu...

    Hiroto Tadano, Tetsuya Sakurai in Large-Scale Scientific Computing (2008)

  18. Article

    Open Access

    TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

    The recent rapid accumulation of sequence resources of various crop species ensures an improvement in the genetics approach, including quantitative trait loci (QTL) analysis as well as the holistic population ...

    Keiichi Mochida, Daisuke Saisho, Takuhiro Yoshida, Tetsuya Sakurai in BMC Plant Biology (2008)

  19. Article

    Open Access

    Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

    Thellungiella halophila (also known as Thellungiella salsuginea) is a model halophyte with a small plant size, short life cycle, and small genome. It easily undergoes genetic transformation by the floral dip** ...

    Teruaki Taji, Tetsuya Sakurai, Keiichi Mochida, Atsushi Ishiwata in BMC Plant Biology (2008)

  20. Article

    Open Access

    Genome sequence of the palaeopolyploid soybean

    Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the...

    Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros in Nature (2010)

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