Neuroproteomics and Its Applications in Research on Nicotine and Other Drugs of Abuse

  • Chapter
  • First Online:
Tobacco Smoking Addiction: Epidemiology, Genetics, Mechanisms, and Treatment
  • 1439 Accesses

Abstract

The rapidly growing field of neuroproteomics is able to track changes in protein expression and the protein modifications underlying various physiological conditions, including the neural diseases related to drug addiction. Thus, it presents great promise in characterizing protein function, biochemical pathways, and networks to understand the mechanisms of drug dependence. In this chapter, we first provide an overview of proteomics technologies and the bioinformatics tools available to analyze the data. Then we summarize the recent applications of proteomics to profile the protein expression pattern in animal or human brain tissues after the administration of nicotine, alcohol, amphetamine, butorphanol, cocaine, and morphine. By comparing the protein expression profiles in response to chronic nicotine exposure with those appearing in response to treatment with other drugs of abuse, we identified three biological processes that appear to be regulated by multiple drugs of abuse: energy metabolism, oxidative stress response, and protein degradation and modification. Such similarity indicates that despite the obvious differences among their chemical properties and the receptors with which they interact, different substances of abuse may cause some similar changes in cellular activities and biological processes in neurons.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (Canada)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (Canada)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (Canada)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (Canada)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Ahn AH, Dziennis S, Hawkes R, Herrup K (1994) The cloning of zebrin II reveals its identity with aldolase C. Development 120:2081–2090

    CAS  PubMed  Google Scholar 

  • Alexander-Kaufman K, James G, Sheedy D, Harper C, Matsumoto I (2006) Differential protein expression in the prefrontal white matter of human alcoholics: a proteomics study. Mol Psychiatry 11:56–65

    Article  CAS  PubMed  Google Scholar 

  • Asaka M, Kimura T, Meguro T, Kato M, Kudo M, Miyazaki T, Alpert E (1994) Alteration of aldolase isozymes in serum and tissues of patients with cancer and other diseases. J Clin Lab Anal 8:144–148

    Article  CAS  PubMed  Google Scholar 

  • Baez S, Segura-Aguilar J, Widersten M, Johansson AS, Mannervik B (1997) Glutathione transferases catalyse the detoxication of oxidized metabolites (o-quinones) of catecholamines and may serve as an antioxidant system preventing degenerative cellular processes. Biochem J 324(Pt 1):25–28

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bahi A, Dreyer JL (2005) Cocaine-induced expression changes of axon guidance molecules in the adult rat brain. Mol Cell Neurosci 28:275–291

    Article  CAS  PubMed  Google Scholar 

  • Ball ST, Moseley HJ, Peters J (1994) Mor2, supernatant malate dehydrogenase, is linked to wa2 and Hba on mouse chromosome 11 in a region of homology with human chromosome 2p. Genomics 24:399–400

    Article  CAS  PubMed  Google Scholar 

  • Barbieri RL, Friedman AJ, Osathanondh R (1989) Cotinine and nicotine inhibit human fetal adrenal 11 beta-hydroxylase. J Clin Endocrinol Metab 69:1221–1224

    Article  CAS  PubMed  Google Scholar 

  • Bashkatova V, Meunier J, Maurice T, Vanin A (2005) Memory impairments and oxidative stress in the hippocampus of in-utero cocaine-exposed rats. Neuroreport 16:1217–1221

    Article  CAS  PubMed  Google Scholar 

  • Bashkatova V, Meunier J, Vanin A, Maurice T (2006) Nitric oxide and oxidative stress in the brain of rats exposed in utero to cocaine. Ann N Y Acad Sci 1074:632–642

    Article  CAS  PubMed  Google Scholar 

  • Beinert H, Kennedy MC (1993) Aconitase, a two-faced protein: enzyme and iron regulatory factor. FASEB J 7:1442–1449

    Article  CAS  PubMed  Google Scholar 

  • Bell RL, Kimpel MW, Rodd ZA, Strother WN, Bai F, Peper CL, Mayfield RD, Lumeng L, Crabb DW, McBride WJ, Witzmann FA (2006) Protein expression changes in the nucleus accumbens and amygdala of inbred alcohol-preferring rats given either continuous or scheduled access to ethanol. Alcohol 40:3–17

    Article  CAS  PubMed  Google Scholar 

  • Berardini TZ, Drygas-Williams M, Callard GV, Tolan DR (1997) Identification of neuronal isozyme specific residues by comparison of goldfish aldolase C to other aldolases. Comp Biochem Physiol A Physiol 117:471–476

    Article  CAS  PubMed  Google Scholar 

  • Berry RM (2005) ATP synthesis: the world’s smallest wind-up toy. Curr Biol 15:R385–R387

    Article  CAS  PubMed  Google Scholar 

  • Bierczynska-Krzysik A, Bonar E, Drabik A, Noga M, Suder P, Dylag T, Dubin A, Kotlinska J, Silberring J (2006) Rat brain proteome in morphine dependence. Neurochem Int 49:401–406

    Article  CAS  PubMed  Google Scholar 

  • Boess F, Ndikum-Moffor FM, Boelsterli UA, Roberts SM (2000) Effects of cocaine and its oxidative metabolites on mitochondrial respiration and generation of reactive oxygen species. Biochem Pharmacol 60:615–623

    Article  CAS  PubMed  Google Scholar 

  • Brown JM, Yamamoto BK (2003) Effects of amphetamines on mitochondrial function: role of free radicals and oxidative stress. Pharmacol Ther 99:45–53

    Article  CAS  PubMed  Google Scholar 

  • Bryk R, Griffin P, Nathan C (2000) Peroxynitrite reductase activity of bacterial peroxiredoxins. Nature 407:211–215

    Article  CAS  PubMed  Google Scholar 

  • Bulteau AL, O’Neill HA, Kennedy MC, Ikeda-Saito M, Isaya G, Szweda LI (2004) Frataxin acts as an iron chaperone protein to modulate mitochondrial aconitase activity. Science 305:242–245

    Article  CAS  PubMed  Google Scholar 

  • Butterfield DA, Lauderback CM (2002) Lipid peroxidation and protein oxidation in Alzheimer’s disease brain: potential causes and consequences involving amyloid beta-peptide-associated free radical oxidative stress. Free Radic Biol Med 32:1050–1060

    Article  CAS  PubMed  Google Scholar 

  • Butterfield LH, Merino A, Golub SH, Shau H (1999) From cytoprotection to tumor suppression: the multifactorial role of peroxiredoxins. Antioxid Redox Signal 1:385–402

    Article  CAS  PubMed  Google Scholar 

  • Butterfield DA, Perluigi M, Sultana R (2006) Oxidative stress in Alzheimer’s disease brain: new insights from redox proteomics. Eur J Pharmacol 545:39–50

    Article  CAS  PubMed  Google Scholar 

  • Calabrese V, Testa G, Ravagna A, Bates TE, Stella AM (2000) HSP70 induction in the brain following ethanol administration in the rat: regulation by glutathione redox state. Biochem Biophys Res Commun 269:397–400

    Article  CAS  PubMed  Google Scholar 

  • Canete-Soler R, Reddy KS, Tolan DR, Zhai J (2005) Aldolases a and C are ribonucleolytic components of a neuronal complex that regulates the stability of the light-neurofilament mRNA. J Neurosci 25:4353–4364

    Article  CAS  PubMed  Google Scholar 

  • Canoz O, Gunes T, Deniz K, Akgun H, Balkanli S (2006) Perinatal expression of HSP70 and VEGF in neonatal rat lung vessels exposed to nicotine during gestation. APMIS 114:10–14

    Article  CAS  PubMed  Google Scholar 

  • Carboni L, Vighini M, Piubelli C, Castelletti L, Milli A, Domenici E (2006) Proteomic analysis of rat hippocampus and frontal cortex after chronic treatment with fluoxetine or putative novel antidepressants: CRF1 and NK1 receptor antagonists. Eur Neuropsychopharmacol 16:521–537

    Article  CAS  PubMed  Google Scholar 

  • Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S et al (2005) The transcriptional landscape of the mammalian genome. Science 309:1559–1563

    Article  CAS  PubMed  Google Scholar 

  • Cecconi D, Mion S, Astner H, Domenici E, Righetti PG, Carboni L (2007) Proteomic analysis of rat cortical neurons after fluoxetine treatment. Brain Res 1135:41–51

    Article  CAS  PubMed  Google Scholar 

  • Chae HZ, Chung SJ, Rhee SG (1994) Thioredoxin-dependent peroxide reductase from yeast. J Biol Chem 269:27670–27678

    CAS  PubMed  Google Scholar 

  • Chen XJ, Wang X, Kaufman BA, Butow RA (2005) Aconitase couples metabolic regulation to mitochondrial DNA maintenance. Science 307:714–717

    Article  CAS  PubMed  Google Scholar 

  • Claverie JM (2005) Fewer genes, more noncoding RNA. Science 309:1529–1530

    Article  CAS  PubMed  Google Scholar 

  • Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR, Packer NH (2003) GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res 31:511–513

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cormier A, Morin C, Zini R, Tillement JP, Lagrue G (2001) In vitro effects of nicotine on mitochondrial respiration and superoxide anion generation. Brain Res 900:72–79

    Article  CAS  PubMed  Google Scholar 

  • Cormier A, Morin C, Zini R, Tillement JP, Lagrue G (2003) Nicotine protects rat brain mitochondria against experimental injuries. Neuropharmacology 44:642–652

    Article  CAS  PubMed  Google Scholar 

  • Cox TM (1994) Aldolase B and fructose intolerance. FASEB J 8:62–71

    Article  CAS  PubMed  Google Scholar 

  • Cunha-Oliveira T, Rego AC, Cardoso SM, Borges F, Swerdlow RH, Macedo T, de Oliveira CR (2006) Mitochondrial dysfunction and caspase activation in rat cortical neurons treated with cocaine or amphetamine. Brain Res 1089:44–54

    Article  CAS  PubMed  Google Scholar 

  • Cunha-Oliveira T, Rego AC, Garrido J, Borges F, Macedo T, Oliveira CR (2007) Street heroin induces mitochondrial dysfunction and apoptosis in rat cortical neurons. J Neurochem 101(2):543–554

    Article  CAS  PubMed  Google Scholar 

  • Damodaran S, Dlugos CA, Wood TD, Rabin RA (2006) Effects of chronic ethanol administration on brain protein levels: a proteomic investigation using 2-D DIGE system. Eur J Pharmacol 547:75–82

    Article  CAS  PubMed  Google Scholar 

  • Das KC, Pahl PM, Guo XL, White CW (2001) Induction of peroxiredoxin gene expression by oxygen in lungs of newborn primates. Am J Respir Cell Mol Biol 25:226–232

    Article  CAS  PubMed  Google Scholar 

  • Davidson C, Gow AJ, Lee TH, Ellinwood EH (2001) Methamphetamine neurotoxicity: necrotic and apoptotic mechanisms and relevance to human abuse and treatment. Brain Res Brain Res Rev 36:1–22

    Article  CAS  PubMed  Google Scholar 

  • Dietrich JB, Mangeol A, Revel MO, Burgun C, Aunis D, Zwiller J (2005) Acute or repeated cocaine administration generates reactive oxygen species and induces antioxidant enzyme activity in dopaminergic rat brain structures. Neuropharmacology 48:965–974

    Article  CAS  PubMed  Google Scholar 

  • DiMauro S, Bruno C (1998) Glycogen storage diseases of muscle. Curr Opin Neurol 11:477–484

    Article  CAS  PubMed  Google Scholar 

  • Donohue TM Jr, Osna NA (2003) Intracellular proteolytic systems in alcohol-induced tissue injury. Alcohol Res Health 27:317–324

    PubMed  Google Scholar 

  • Drakenberg K, Nikoshkov A, Horvath MC, Fagergren P, Gharibyan A, Saarelainen K, Rahman S, Nylander I, Bakalkin G, Rajs J, Keller E, Hurd YL (2006) Mu opioid receptor A118G polymorphism in association with striatal opioid neuropeptide gene expression in heroin abusers. Proc Natl Acad Sci U S A 103:7883–7888

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dunckley T, Lukas RJ (2003) Nicotine modulates the expression of a diverse set of genes in the neuronal SH-SY5Y cell line. J Biol Chem 278:15633–15640

    Article  CAS  PubMed  Google Scholar 

  • Fillingame RH, Angevine CM, Dmitriev OY (2003) Mechanics of coupling proton movements to c-ring rotation in ATP synthase. FEBS Lett 555:29–34

    Article  CAS  PubMed  Google Scholar 

  • Fountoulakis M (2004) Application of proteomics technologies in the investigation of the brain. Mass Spectrom Rev 23:231–258

    Article  CAS  PubMed  Google Scholar 

  • Freeman WM, Brebner K, Amara SG, Reed MS, Pohl J, Phillips AG (2005) Distinct proteomic profiles of amphetamine self-administration transitional states. Pharmacogenomics J 5:203–214

    Article  CAS  PubMed  Google Scholar 

  • Fujii J, Ikeda Y (2002) Advances in our understanding of peroxiredoxin, a multifunctional, mammalian redox protein. Redox Rep 7:123–130

    Article  CAS  PubMed  Google Scholar 

  • Gabbita SP, Lovell MA, Markesbery WR (1998) Increased nuclear DNA oxidation in the brain in Alzheimer’s disease. J Neurochem 71:2034–2040

    Article  CAS  PubMed  Google Scholar 

  • Galvin RJ, Ramp WK, Lenz LG (1988) Smokeless tobacco contains a nonnicotine inhibitor of bone metabolism. Toxicol Appl Pharmacol 95:292–300

    Article  CAS  PubMed  Google Scholar 

  • Garavelli JS (2004) The RESID database of protein modifications as a resource and annotation tool. Proteomics 4:1527–1533

    Article  CAS  PubMed  Google Scholar 

  • Gerner C, Frohwein U, Gotzmann J, Bayer E, Gelbmann D, Bursch W, Schulte-Hermann R (2000) The Fas-induced apoptosis analyzed by high throughput proteome analysis. J Biol Chem 275:39018–39026

    Article  CAS  PubMed  Google Scholar 

  • Goodlett CR, Horn KH (2001) Mechanisms of alcohol-induced damage to the develo** nervous system. Alcohol Res Health 25:175–184

    CAS  PubMed  Google Scholar 

  • Goodlett CR, Horn KH, Zhou FC (2005) Alcohol teratogenesis: mechanisms of damage and strategies for intervention. Exp Biol Med (Maywood) 230:394–406

    Article  CAS  Google Scholar 

  • Gutala R, Wang J, Kadapakkam S, Hwang Y, Ticku M, Li MD (2004) Microarray analysis of ethanol-treated cortical neurons reveals disruption of genes related to the ubiquitin-proteasome pathway and protein synthesis. Alcohol Clin Exp Res 28:1779–1788

    Article  CAS  PubMed  Google Scholar 

  • Guzman DC, Vazquez IE, Brizuela NO, Alvarez RG, Mejia GB, Garcia EH, Santamaria D, de Apreza MR, Olguin HJ (2006) Assessment of oxidative damage induced by acute doses of morphine sulfate in postnatal and adult rat brain. Neurochem Res 31:549–554

    Article  CAS  PubMed  Google Scholar 

  • Haab BB, Dunham MJ, Brown PO (2001) Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol 2: RESEARCH0004.

    Google Scholar 

  • Hajnoczky G, Buzas CJ, Pacher P, Hoek JB, Rubin E (2005) Alcohol and mitochondria in cardiac apoptosis: mechanisms and visualization. Alcohol Clin Exp Res 29:693–701

    Article  CAS  PubMed  Google Scholar 

  • Harada S, Fujii C, Hayashi A, Ohkoshi N (2001) An association between idiopathic Parkinson’s disease and polymorphisms of phase II detoxification enzymes: glutathione S-transferase M1 and quinone oxidoreductase 1 and 2. Biochem Biophys Res Commun 288:887–892

    Article  CAS  PubMed  Google Scholar 

  • Hemby SE (2006) Assessment of genome and proteome profiles in cocaine abuse. Prog Brain Res 158:173–195

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Huber LA (2003) Is proteomics heading in the wrong direction? Nat Rev Mol Cell Biol 4:74–80

    Article  CAS  PubMed  Google Scholar 

  • Husain K, Scott BR, Reddy SK, Somani SM (2001) Chronic ethanol and nicotine interaction on rat tissue antioxidant defense system. Alcohol 25:89–97

    Article  CAS  PubMed  Google Scholar 

  • Hwang YY, Li MD (2006) Proteins differentially expressed in response to nicotine in five rat brain regions: identification using a 2-DE/MS-based proteomics approach. Proteomics 6:3138–3153

    Article  CAS  PubMed  Google Scholar 

  • Iacovelli L, Fulceri F, De Blasi A, Nicoletti F, Ruggieri S, Fornai F (2006) The neurotoxicity of amphetamines: bridging drugs of abuse and neurodegenerative disorders. Exp Neurol 201:24–31

    Article  CAS  PubMed  Google Scholar 

  • Ishii T, Itoh K, Takahashi S, Sato H, Yanagawa T, Katoh Y, Bannai S, Yamamoto M (2000) Transcription factor Nrf2 coordinately regulates a group of oxidative stress-inducible genes in macrophages. J Biol Chem 275:16023–16029

    Article  CAS  PubMed  Google Scholar 

  • Iwazaki T, McGregor IS, Matsumoto I (2006) Protein expression profile in the striatum of acute methamphetamine-treated rats. Brain Res 1097:19–25

    Article  CAS  PubMed  Google Scholar 

  • ** Z, Roomans GM (1997) Effects of nicotine on the uterine epithelium studied by X-ray microanalysis. J Submicrosc Cytol Pathol 29:179–186

    CAS  PubMed  Google Scholar 

  • Kanamoto T, Hellman U, Heldin CH, Souchelnytskyi S (2002) Functional proteomics of transforming growth factor-beta1-stimulated Mv1Lu epithelial cells: Rad51 as a target of TGFbeta1-dependent regulation of DNA repair. Embo J 21:1219–1230

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kane JK, Konu O, Ma JZ, Li MD (2004) Nicotine coregulates multiple pathways involved in protein modification/degradation in rat brain. Brain Res Mol Brain Res 132:181–191. https://doi.org/10.1016/j.molbrainres.2004.09.010

    Article  CAS  PubMed  Google Scholar 

  • Katyare SS, Shallom JM (1988) Altered cerebral protein turnover in rats following prolonged in vivo treatment with nicotine. J Neurochem 50:1356–1363

    Article  CAS  PubMed  Google Scholar 

  • Kerns RT, Ravindranathan A, Hassan S, Cage MP, York T, Sikela JM, Williams RW, Miles MF (2005) Ethanol-responsive brain region expression networks: implications for behavioral responses to acute ethanol in DBA/2J versus C57BL/6J mice. J Neurosci 25:2255–2266

    Article  CAS  PubMed  Google Scholar 

  • Khawaja X, Xu J, Liang JJ, Barrett JE (2004) Proteomic analysis of protein changes develo** in rat hippocampus after chronic antidepressant treatment: implications for depressive disorders and future therapies. J Neurosci Res 75:451–460

    Article  CAS  PubMed  Google Scholar 

  • Kim H, Lee TH, Park ES, Suh JM, Park SJ, Chung HK, Kwon OY, Kim YK, Ro HK, Shong M (2000) Role of peroxiredoxins in regulating intracellular hydrogen peroxide and hydrogen peroxide-induced apoptosis in thyroid cells. J Biol Chem 275:18266–18270

    Article  CAS  PubMed  Google Scholar 

  • Kim SI, Voshol H, van Oostrum J, Hastings TG, Cascio M, Glucksman MJ (2004) Neuroproteomics: expression profiling of the brain’s proteomes in health and disease. Neurochem Res 29:1317–1331

    Article  CAS  PubMed  Google Scholar 

  • Kim SY, Chudapongse N, Lee SM, Levin MC, Oh JT, Park HJ, Ho IK (2005) Proteomic analysis of phosphotyrosyl proteins in morphine-dependent rat brains. Brain Res Mol Brain Res 133:58–70

    Article  CAS  PubMed  Google Scholar 

  • Konu O, Kane JK, Barrett T, Vawter MP, Chang R, Ma JZ, Donovan DM, Sharp B, Becker KG, Li MD (2001) Region-specific transcriptional response to chronic nicotine in rat brain. Brain Res 909:194–203

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Konu O, Xu X, Ma JZ, Kane J, Wang J, Shi SJ, Li MD (2004) Application of a customized pathway-focused microarray for gene expression profiling of cellular homeostasis upon exposure to nicotine in PC12 cells. Brain Res Mol Brain Res 121:102–113. https://doi.org/10.1016/j.molbrainres.2003.11.012

    Article  CAS  PubMed  Google Scholar 

  • Kreuder J, Borkhardt A, Repp R, Pekrun A, Gottsche B, Gottschalk U, Reichmann H, Schachenmayr W, Schlegel K, Lampert F (1996) Brief report: inherited metabolic myopathy and hemolysis due to a mutation in aldolase A. N Engl J Med 334:1100–1104

    Article  CAS  PubMed  Google Scholar 

  • La Y, Wan C, Zhu H, Yang Y, Chen Y, Pan Y, Ji B, Feng G, He L (2006) Hippocampus protein profiling reveals aberration of malate dehydrogenase in chlorpromazine/clozapine treated rats. Neurosci Lett 408:29–34

    Article  CAS  PubMed  Google Scholar 

  • Lad RP, Smith MA, Hilt DC (1991) Molecular cloning and regional distribution of rat brain cyclophilin. Brain Res Mol Brain Res 9:239–244

    Article  CAS  PubMed  Google Scholar 

  • LaPorte DC (1993) The isocitrate dehydrogenase phosphorylation cycle: regulation and enzymology. J Cell Biochem 51:14–18

    Article  CAS  PubMed  Google Scholar 

  • Lefrancois-Martinez AM, Bertherat J, Val P, Tournaire C, Gallo-Payet N, Hyndman D, Veyssiere G, Bertagna X, Jean C, Martinez A (2004) Decreased expression of cyclic adenosine monophosphate-regulated aldose reductase (AKR1B1) is associated with malignancy in human sporadic adrenocortical tumors. J Clin Endocrinol Metab 89:3010–3019

    Article  CAS  PubMed  Google Scholar 

  • Lewis TS, Hunt JB, Aveline LD, Jonscher KR, Louie DF, Yeh JM, Nahreini TS, Resing KA, Ahn NG (2000) Identification of novel MAP kinase pathway signaling targets by functional proteomics and mass spectrometry. Mol Cell 6:1343–1354

    Article  CAS  PubMed  Google Scholar 

  • Lewohl JM, Van Dyk DD, Craft GE, Innes DJ, Mayfield RD, Cobon G, Harris RA, Dodd PR (2004) The application of proteomics to the human alcoholic brain. Ann N Y Acad Sci 1025:14–26

    Article  CAS  PubMed  Google Scholar 

  • Li MD, Konu O, Kane JK, Becker KG (2002) Microarray technology and its application on nicotine research. Mol Neurobiol 25:265–285. https://doi.org/10.1385/MN:25:3:265

    Article  CAS  PubMed  Google Scholar 

  • Li MD, Kane JK, Wang J, Ma JZ (2004) Time-dependent changes in transcriptional profiles within five rat brain regions in response to nicotine treatment. Brain Res Mol Brain Res 132:168–180. https://doi.org/10.1016/j.molbrainres.2004.09.009

    Article  CAS  PubMed  Google Scholar 

  • Li KW, Jimenez CR, van der Schors RC, Hornshaw MP, Schoffelmeer AN, Smit AB (2006) Intermittent administration of morphine alters protein expression in rat nucleus accumbens. Proteomics 6:2003–2008

    Article  CAS  PubMed  Google Scholar 

  • Liebler DC (2002) Proteomic approaches to characterize protein modifications: new tools to study the effects of environmental exposures. Environ Health Perspect 110(Suppl 1):3–9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Linke S, Goertz P, Baader SL, Gieselmann V, Siebler M, Junghans U, Kappler J (2006) Aldolase C/zebrin II is released to the extracellular space after stroke and inhibits the network activity of cortical neurons. Neurochem Res 31:1297–1303

    Article  CAS  PubMed  Google Scholar 

  • Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S (2002) The protein kinase complement of the human genome. Science 298:1912–1934

    Article  CAS  PubMed  Google Scholar 

  • Mastronicola D, Arcuri E, Arese M, Bacchi A, Mercadante S, Cardelli P, Citro G, Sarti P (2004) Morphine but not fentanyl and methadone affects mitochondrial membrane potential by inducing nitric oxide release in glioma cells. Cell Mol Life Sci 61:2991–2997

    Article  CAS  PubMed  Google Scholar 

  • McClung CA, Nestler EJ, Zachariou V (2005) Regulation of gene expression by chronic morphine and morphine withdrawal in the locus ceruleus and ventral tegmental area. J Neurosci 25:6005–6015

    Article  CAS  PubMed  Google Scholar 

  • Mendes Soares LM, Valcarcel J (2006) The expanding transcriptome: the genome as the ‘Book of Sand’. Embo J 25:923–931

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Miller MC 3rd, Mohrenweiser HW, Bell DA (2001) Genetic variability in susceptibility and response to toxicants. Toxicol Lett 120:269–280

    Article  CAS  PubMed  Google Scholar 

  • Miller EK, Raese JD, Morrison-Bogorad M (1991) Expression of heat shock protein 70 and heat shock cognate 70 messenger RNAs in rat cortex and cerebellum after heat shock or amphetamine treatment. J Neurochem 56:2060–2071

    Article  CAS  PubMed  Google Scholar 

  • Miller JC, Zhou H, Kwekel J, Cavallo R, Burke J, Butler EB, Teh BS, Haab BB (2003) Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers. Proteomics 3:56–63

    Article  CAS  PubMed  Google Scholar 

  • Mizusawa H, Ishii T, Bannai S (2000) Peroxiredoxin I (macrophage 23 kDa stress protein) is highly and widely expressed in the rat nervous system. Neurosci Lett 283:57–60

    Article  CAS  PubMed  Google Scholar 

  • Mor F, Izak M, Cohen IR (2005) Identification of aldolase as a target antigen in Alzheimer’s disease. J Immunol 175:3439–3445

    Article  CAS  PubMed  Google Scholar 

  • Morrison RS, Kinoshita Y, Johnson MD, Uo T, Ho JT, McBee JK, Conrads TP, Veenstra TD (2002) Proteomic analysis in the neurosciences. Mol Cell Proteomic 1:553–560

    Article  CAS  Google Scholar 

  • Netto LES, Chae HZ, Kang SW, Rhee SG, Stadtman ER (1996) Removal of hydrogen peroxide by thiol-specific antioxidant enzyme (TSA) is involved with its antioxidant properties. TSA possesses thiol peroxidase activity. J Biol Chem 271:15315–15321

    Article  CAS  Google Scholar 

  • Newhouse PA, Potter A, Levin ED (1997) Nicotinic system involvement in Alzheimer’s and Parkinson’s diseases. Implications for therapeutics. Drugs Aging 11:206–228

    Article  CAS  PubMed  Google Scholar 

  • Newman MB, Arendash GW, Shytle RD, Bickford PC, Tighe T, Sanberg PR (2002) Nicotine’s oxidative and antioxidant properties in CNS. Life Sci 71:2807–2820

    Article  CAS  PubMed  Google Scholar 

  • Nielsen UB, Cardone MH, Sinskey AJ, MacBeath G, Sorger PK (2003) Profiling receptor tyrosine kinase activation by using Ab microarrays. Proc Natl Acad Sci U S A 100:9330–9335

    Article  PubMed  PubMed Central  Google Scholar 

  • Nijman SM, Luna-Vargas MP, Velds A, Brummelkamp TR, Dirac AM, Sixma TK, Bernards R (2005) A genomic and functional inventory of deubiquitinating enzymes. Cell 123:773–786

    Article  CAS  PubMed  Google Scholar 

  • Novikova SI, He F, Bai J, Badan I, Lidow IA, Lidow MS (2005) Cocaine-induced changes in the expression of apoptosis-related genes in the fetal mouse cerebral wall. Neurotoxicol Teratol 27:3–14

    Article  CAS  PubMed  Google Scholar 

  • Nunomura A, Perry G, Hirai K, Aliev G, Takeda A, Chiba S, Smith MA (1999) Neuronal RNA oxidation in Alzheimer’s disease and Down’s syndrome. Ann N Y Acad Sci 893:362–364

    Article  CAS  PubMed  Google Scholar 

  • O’Brien E, Dedova I, Duffy L, Cordwell S, Karl T, Matsumoto I (2006) Effects of chronic risperidone treatment on the striatal protein profiles in rats. Brain Res 1113:24–32

    Article  PubMed  CAS  Google Scholar 

  • Oliveira MT, Rego AC, Macedo TR, Oliveira CR (2003) Drugs of abuse induce apoptotic features in PC12 cells. Ann N Y Acad Sci 1010:667–670

    Article  CAS  PubMed  Google Scholar 

  • Onal A, Uysal A, Ulker S, Delen Y, Yurtseven ME, Evinc A (2004) Alterations of brain tissue in fetal rats exposed to nicotine in utero: possible involvement of nitric oxide and catecholamines. Neurotoxicol Teratol 26:103–112

    Article  CAS  PubMed  Google Scholar 

  • Ozmen I, Naziroglu M, Alici HA, Sahin F, Cengiz M, Eren I (2007) Spinal morphine administration reduces the fatty acid contents in spinal cord and brain by increasing oxidative stress. Neurochem Res 32:19–25

    Article  PubMed  CAS  Google Scholar 

  • Park B, Jeong SK, Lee WS, Seong JK, Paik YK (2004) A simple pattern classification method for alcohol-responsive proteins that are differentially expressed in mouse brain. Proteomics 4:3369–3375

    Article  CAS  PubMed  Google Scholar 

  • Paulson L, Martin P, Ljung E, Blennow K, Davidsson P (2007) Proteome analysis after co-administration of clozapine or haloperidol to MK-801-treated rats. J Neural Transm 114(7):885–891

    Article  CAS  PubMed  Google Scholar 

  • Peshenko IV, Shichi H (2001) Oxidation of active center cysteine of bovine 1-Cys peroxiredoxin to the cysteine sulfenic acid form by peroxide and peroxynitrite. Free Radic Biol Med 31:292–303

    Article  CAS  PubMed  Google Scholar 

  • Pollock JD (2002) Gene expression profiling: methodological challenges, results, and prospects for addiction research. Chem Phys Lipids 121:241–256

    Article  CAS  PubMed  Google Scholar 

  • Poon HF, Abdullah L, Mullan MA, Mullan MJ, Crawford FC (2007) Cocaine-induced oxidative stress precedes cell death in human neuronal progenitor cells. Neurochem Int 50:69–73

    Article  CAS  PubMed  Google Scholar 

  • Predic J, Soskic V, Bradley D, Godovac-Zimmermann J (2002) Monitoring of gene expression by functional proteomics: response of human lung fibroblast cells to stimulation by endothelin-1. Biochemistry 41:1070–1078

    Article  CAS  PubMed  Google Scholar 

  • Prokai L, Zharikova AD, Stevens SM Jr (2005) Effect of chronic morphine exposure on the synaptic plasma-membrane subproteome of rats: a quantitative protein profiling study based on isotope-coded affinity tags and liquid chromatography/mass spectrometry. J Mass Spectrom 40:169–175

    Article  CAS  PubMed  Google Scholar 

  • Ramachandran V, Perez A, Chen J, Senthil D, Schenker S, Henderson GI (2001) In utero ethanol exposure causes mitochondrial dysfunction, which can result in apoptotic cell death in fetal brain: a potential role for 4-hydroxynonenal. Alcohol Clin Exp Res 25:862–871

    Article  CAS  PubMed  Google Scholar 

  • Rambhia S, Mantione KJ, Stefano GB, Cadet P (2005) Morphine modulation of the ubiquitin-proteasome complex is neuroprotective. Med Sci Monit 11:BR386–BR396

    CAS  PubMed  Google Scholar 

  • Rhee SG, Chae HZ, Kim K (2005) Peroxiredoxins: a historical overview and speculative preview of novel mechanisms and emerging concepts in cell signaling. Free Radic Biol Med 38:1543–1552

    Article  CAS  PubMed  Google Scholar 

  • Rhodes JS, Crabbe JC (2005) Gene expression induced by drugs of abuse. Curr Opin Pharmacol 5:26–33

    Article  CAS  PubMed  Google Scholar 

  • Santt O, Baranova H, Albuisson E, Bignon YJ, Lucotte G (2004) Interaction between GSTM1-null and CYP2D6-deficient alleles in the pathogenesis of Parkinson’s disease. Eur J Neurol 11:247–251

    Article  CAS  PubMed  Google Scholar 

  • Sarafian TA, Verity MA, Vinters HV, Shih CC, Shi L, Ji XD, Dong L, Shau H (1999) Differential expression of peroxiredoxin subtypes in human brain cell types. J Neurosci Res 56:206–212

    Article  CAS  PubMed  Google Scholar 

  • Schmid FX (2001) Prolyl isomerases. Adv Protein Chem 59:243–282

    Article  CAS  PubMed  Google Scholar 

  • Sener G, Sehirli O, Ipci Y, Cetinel S, Cikler E, Gedik N, Alican I (2005) Protective effects of taurine against nicotine-induced oxidative damage of rat urinary bladder and kidney. Pharmacology 74:37–44

    Article  CAS  PubMed  Google Scholar 

  • Shadel GS (2005) Mitochondrial DNA, aconitase ‘wraps’ it up. Trends Biochem Sci 30:294–296

    Article  CAS  PubMed  Google Scholar 

  • Sharp FR, Massa SM, Swanson RA (1999) Heat-shock protein protection. Trends Neurosci 22:97–99

    Article  CAS  PubMed  Google Scholar 

  • Slotkin TA, Seidler FJ, Qiao D, Aldridge JE, Tate CA, Cousins MM, Proskocil BJ, Sekhon HS, Clark JA, Lupo SL, Spindel ER (2005) Effects of prenatal nicotine exposure on primate brain development and attempted amelioration with supplemental choline or vitamin C: neurotransmitter receptors, cell signaling and cell development biomarkers in fetal brain regions of rhesus monkeys. Neuropsychopharmacology 30:129–144

    Article  CAS  PubMed  Google Scholar 

  • Sokolov BP, Jiang L, Trivedi NS, Aston C (2003) Transcription profiling reveals mitochondrial, ubiquitin and signaling systems abnormalities in postmortem brains from subjects with a history of alcohol abuse or dependence. J Neurosci Res 72:756–767

    Article  CAS  PubMed  Google Scholar 

  • Soto-Otero R, Mendez-Alvarez E, Hermida-Ameijeiras A, Lopez-Real AM, Labandeira-Garcia JL (2002) Effects of (-)-nicotine and (-)-cotinine on 6-hydroxydopamine-induced oxidative stress and neurotoxicity: relevance for Parkinson’s disease. Biochem Pharmacol 64:125–135

    Article  CAS  PubMed  Google Scholar 

  • Sreekumar A, Nyati MK, Varambally S, Barrette TR, Ghosh D, Lawrence TS, Chinnaiyan AM (2001) Profiling of cancer cells using protein microarrays: discovery of novel radiation-regulated proteins. Cancer Res 61:7585–7593

    CAS  PubMed  Google Scholar 

  • Stadtman ER (2006) Protein oxidation and aging. Free Radic Res 40:1250–1258

    Article  CAS  PubMed  Google Scholar 

  • Stefanizzi I, Canete-Soler R (2007) Coregulation of light neurofilament mRNA by poly(A)-binding protein and aldolase C: implications for neurodegeneration. Brain Res 1139:15–28

    Article  CAS  PubMed  Google Scholar 

  • Sun AY, Sun GY (2001) Ethanol and oxidative mechanisms in the brain. J Biomed Sci 8:37–43

    Article  CAS  PubMed  Google Scholar 

  • Tannu N, Mash DC, Hemby SE (2007) Cytosolic proteomic alterations in the nucleus accumbens of cocaine overdose victims. Mol Psychiatry 12:55–73

    Article  CAS  PubMed  Google Scholar 

  • Thrift RN, Forte TM, Cahoon BE, Shore VG (1986) Characterization of lipoproteins produced by the human liver cell line, Hep G2, under defined conditions. J Lipid Res 27:236–250

    CAS  PubMed  Google Scholar 

  • Wilkens S (2005) Rotary molecular motors. Adv Protein Chem 71:345–382

    Article  CAS  PubMed  Google Scholar 

  • Witzmann FA, Strother WN (2004) Proteomics and alcoholism. Int Rev Neurobiol 61:189–214

    Article  CAS  PubMed  Google Scholar 

  • Witzmann FA, Li J, Strother WN, McBride WJ, Hunter L, Crabb DW, Lumeng L, Li TK (2003) Innate differences in protein expression in the nucleus accumbens and hippocampus of inbred alcohol-preferring and -nonpreferring rats. Proteomics 3:1335–1344

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • **e YX, Bezard E, Zhao BL (2005) Investigating the receptor-independent neuroprotective mechanisms of nicotine in mitochondria. J Biol Chem 280:32405–32412

    Article  CAS  PubMed  Google Scholar 

  • Yamamoto BK, Bankson MG (2005) Amphetamine neurotoxicity: cause and consequence of oxidative stress. Crit Rev Neurobiol 17:87–117

    Article  CAS  PubMed  Google Scholar 

  • Yeom M, Shim I, Lee HJ, Hahm DH (2005) Proteomic analysis of nicotine-associated protein expression in the striatum of repeated nicotine-treated rats. Biochem Biophys Res Commun 326:321–328

    Article  CAS  PubMed  Google Scholar 

  • Yim MB, Chae HZ, Rhee SG, Chock PB, Stadtman ER (1994) On the protective mechanism of the thiol-specific antioxidant enzyme against the oxidative damage of biomacromolecules. J Biol Chem 269:1621–1626

    CAS  PubMed  Google Scholar 

  • Yuan C, Acosta D Jr (1996) Cocaine-induced mitochondrial dysfunction in primary cultures of ratcardiomyocytes. Toxicology 112:1–10

    Article  CAS  PubMed  Google Scholar 

  • Yuan C, Acosta D Jr (2000) Effect of cocaine on mitochondrial electron transport chain evaluated in primary cultures of neonatal rat myocardial cells and in isolated mitochondrial preparations. Drug Chem Toxicol 23:339–348

    Article  CAS  PubMed  Google Scholar 

  • Yuferov V, Nielsen D, Butelman E, Kreek MJ (2005) Microarray studies of psychostimulant-induced changes in gene expression. Addict Biol 10:101–118

    Article  CAS  PubMed  Google Scholar 

  • Zhang S, Day IN, Ye S (2001) Microarray analysis of nicotine-induced changes in gene expression in endothelial cells. Physiol Genomics 5:187–192

    Article  CAS  PubMed  Google Scholar 

  • Zimmerman M, McGeachie J (1987) The effect of nicotine on aortic endothelium. A quantitative ultrastructural study. Atherosclerosis 63:33–41

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This chapter was modified from a paper reported by our group in Molecular Neurobiology (Wang et al. 2011; 44:269–286). The related contents are reused with permission.

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Nature Singapore Pte Ltd.

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Li, M.D. (2018). Neuroproteomics and Its Applications in Research on Nicotine and Other Drugs of Abuse. In: Tobacco Smoking Addiction: Epidemiology, Genetics, Mechanisms, and Treatment. Springer, Singapore. https://doi.org/10.1007/978-981-10-7530-8_13

Download citation

Publish with us

Policies and ethics

Navigation