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A global evaluation of mitochondrial DNA diversity and distribution of dromedary, Camelus dromedarius from north-central Saudi Arabia

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Abstract

Knowledge of genetic variability within and among types and breeds of dromedary (Camelus dromedarius L.) can be a valuable asset in selective breeding of desirable characteristics and will shed light on their origin, dynamics of domestication, and dispersion. Variability in an 809 bp segment of the mtDNA genome was measured within and among dromedaries from eight indigenous and one exogenous breed from Ha’il in north-central Saudi Arabia. Sixteen mtDNA haplotypes were identified among 47 camels. Haplotypic diversity among breeds is high (Hd = 0.817); most of the AMOVA variance (55.05%) occurs within breeds. Phylogenetic comparison of these haplotypes with those obtained across their geographic range showed that most haplotypes were placed within the same cluster with ancient wild dromedaries and the two newly identified haplotypes in this study. The most prevalent haplotypes found in dromedaries from this area appear to be ancestral to most other dromedaries and differ from each other by only one SNP. These results support the hypothesis that the Arabian Peninsula is a hub of diversification for dromedaries.

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References

  • Abdallah H. R. and Faye B. 2012 Phenotypic classification of Saudi Arabian camel (Camelus dromedarius) by their body measurements. Emir. J. Food Agric. 24, 272–280.

    Google Scholar 

  • Abdussamad A., Charruau P., Kalla D. and Burger P. 2015 Validating local knowledge on camels: colour phenotypes and genetic variation of dromedaries in the Nigeria-Niger corridor. Livest. Sci. 181, 131–136.

    Article  Google Scholar 

  • Agriculture-Census 2020 MoEWA Statistics, KSA.

  • Agri-report 2010 Hail ministry of agriculture report no 91033, 15 March.

  • Ahmed M. O., Salem F. B., Bedhiaf S., Rekik B. and Djemali M. 2010 Genetic diversity in Tunisian dromedary (Camelus dromedarius) populations using microsatellite markers. Livest. Sci. 132, 182–185.

    Article  Google Scholar 

  • Al-Ahmadi K., Alahmadi S. and Al-Zahrani A. 2019 Spatiotemporal clustering of Middle East respiratory syndrome coronavirus (MERS-CoV) incidence in Saudi Arabia, 2012–2019. Int. J. Environ. Res. Pub. He. 16, 2520.

    Article  Google Scholar 

  • Alaqeely R., Alhajeri B. H., Almathen F. and Alhaddad H. 2021 Mitochondrial sequence variation, haplotype diversity, and relationships among dromedary camel-types. Front. Genet. 12, 723964.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • AlAskar H., Alhajeri B. H., Almathen F. and Alhaddad H. 2020 Genetic diversity and population structure of dromedary camel-types. J. Hered. 111, 405–413.

    Article  PubMed  Google Scholar 

  • Alhaddad H. and Alhajeri B. H. 2019 Cdrom archive: a gateway to study camel phenotypes. Front Genet. 10, 48.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Al-Harbi M. S. and Amer S. A. 2012 Tissue-specific isoenzyme variations in Arabian camel, Camelus dromedaries. Adv. Biosci. Biotechnol. 3, 863–868.

    Article  Google Scholar 

  • Almathen F., Charruau P., Mohandesan E., Mwacharo J. M., Orozco-terWengel P., Pitt D. et al. 2016 Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary. Proc. Natl. Acad. Sci. USA 113, 6707–6712.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Almathen F., Elbir H., Bahbahani H., Mwacharo J. and Hanotte O. 2018 Polymorphisms in MC1R and ASIP genes are associated with coat color variation in the Arabian camel. J. Hered. 109, 700–706.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Almathen F., Bahbahani H., Elbir H., Alfattah M. and Sheikh A. 2022 Genetic structure of Arabian Peninsula dromedary camels revealed three geographic groups. Saudi J. Biol. Sci. 29, 1422–1427.

    Article  CAS  PubMed  Google Scholar 

  • Al-Swailem A. M., Al-Busadah K. A., Shehata M. M., Al-Anazi I. O. and Askari E. 2007 Classification of Saudi Arabian camel (Camelus dromedarius) subtypes based on RAPD technique. J. Food Agric. Environ. 5, 143.

    CAS  Google Scholar 

  • Al-Swailem A. M., Shehata M. M., Abu-Duhier F. M., Al-Yamani E. J., Al-Busadah K. A., Al-Arawi M. S. et al. 2010 Sequencing, analysis, and annotation of expressed sequence tags for Camelus dromedarius. PLoS One 5, e10720.

    Article  PubMed  PubMed Central  Google Scholar 

  • Bahbahani H. and Almathen F. 2022 Homogeneity of Arabian Peninsula dromedary camel populations with signals of geographic distinction based on whole genome sequence data. Sci. Rep. 12, 130.

    Article  PubMed  PubMed Central  Google Scholar 

  • Belkhir A. O., Chehma A. and Faye B. 2013 Phenotypic variability of two principal Algerian camel’s populations (Targui and Sahraoui). Emir. J. Food Agric. 25, 231–237.

    Article  Google Scholar 

  • El-Seoudy A. A., Abdelsalam A., Tharwat E. and Abdelsalam F. A. 2008 Molecular genetic identification of some camel breeds in Egypt. Egypt. J. Genet. Cytol. 3, 63–79.

    Google Scholar 

  • Excoffier L., Smouse P. E. and Quattro J. M. 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479–491.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fadlelmoula A. A., Mudarris M. S. and Hariri M. S. 2015 Phenotypic classification based on body measurements and body features of some Saudi camel types (Camelus dromedarius). J. Camel Pract. Res. 22, 265–270.

    Article  Google Scholar 

  • Hall T. A. 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic acids symposium series, pp 95–98. Oxford.

  • Harek D., Bouhadad R., Sahel H., Cherifi Y., El Mokhefi M., Boukhtala S. et al. 2017 Genetic diversity status of camel’s resources (Camelus Dromedarius. Linnaeus, 1758) in Algeria. Genet. Biodivers. J. 1, 43–65.

    Article  Google Scholar 

  • Hossam Mahmoud A., Mohammed Abu-Tarbush F., Alshaik M., Aljumaah R. and Saleh A. 2020 Genetic diversity and population genetic structure of six dromedary camel (Camelus dromedarius) populations in Saudi Arabia. Saudi J. Biol. Sci. 27, 1384–1389.

    Article  Google Scholar 

  • Ishag I., Reissmann M., Peters K., Musa L. and Ahmed M. 2010 Phenotypic and molecular characterization of six Sudanese camel breeds. S. Afr. J. Anim. Sci. 40, 319–326.

    CAS  Google Scholar 

  • Kimura M. 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111–120.

    Article  CAS  PubMed  Google Scholar 

  • Lado S., Elbers J. P., Doskocil A. and Scaglione D. 2020 Genome-wide diversity and global migration patterns in dromedaries follow ancient caravan routes. Commun. Biol. 3, 387.

    Article  PubMed  PubMed Central  Google Scholar 

  • Legesse Y. W., Dunn C. D., Mauldin M. R., Ordonez-Garza N., Rowden G. R., Gebre Y. M. et al. 2018 Morphometric and genetic variation in 8 breeds of Ethiopian camels (Camelus dromedarius). J. Anim. Sci. 96, 4925–4934.

    PubMed  PubMed Central  Google Scholar 

  • Leigh J. W. and Bryant D. 2015 POPART: full-feature software for haplotype network construction. Methods Ecol. Evol. 6, 1110–1116.

    Article  Google Scholar 

  • Librado P. and Rozas J. 2009 DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinform. 25, 1451–1452.

    Article  CAS  Google Scholar 

  • Mahmoud A. H., Farah M. A., Rady A., Alanazi K. M., Mohammed O. et al. 2019 Utilization of microsatellite markers in genoty** of Saudi Arabian camels for productivity and conservation. Can. J. Anim. Sci. 100, 253–261.

    Article  Google Scholar 

  • Manee M. M., Alshehri M. A., Binghadir S. A., Aldhafer S. H., Alswailem R. M. et al. 2019 Comparative analysis of camelid mitochondrial genomes. J. Genet. 98, 1–12.

    Article  CAS  Google Scholar 

  • Mburu D., Ochieng J., Kuria S., Jianlin H., Kaufmann B., Rege J. E. et al. 2003 Genetic diversity and relationships of indigenous Kenyan camel (Camelus dromedarius) populations: implications for their classification. Anim. Genet. 34, 26–32.

    Article  CAS  PubMed  Google Scholar 

  • Nei M. 1987 Molecular evolutionary genetics, Columbia University Press, New York.

    Book  Google Scholar 

  • Nouairia G., Kdidi S., Salah R. B., Hammadi M., Khorchani T. and Yahyaoui M. H. 2015 Assessing genetic diversity of three Tunisian dromedary camel (Camelus dromedarius) subpopulations using microsatellite markers. Emir. J. Food Agric. 27, 362–366.

    Article  Google Scholar 

  • Patel A., Jisha T., Upadhyay D., Parikh R., Upadhyay M., Thaker R. et al. 2015 Molecular characterization of camel breeds of Gujarat using microsatellite markers. Livest. Sci. 181, 85–88.

    Article  Google Scholar 

  • Paul P., Pal P. and Banerjee E. 2020 Genetic variation of Indian Camel (Camelus dromedarius) breeds using mitochondrion COI gene analysis. J. Biol. Med. Open Access 1, 112.

    Google Scholar 

  • Piro M. 2021 Aspects of molecular genetics in dromedary camel. Front. Genet. 12, 723181.

  • Piro M., Bouazzati O., Bengoumi M., El Allali K., Achaaban M., Benjouad A. et al. 2011 Genetic characterisation of Moroccan camel populations using microsatellites markers. J. Camel Pract. Res. 18, 167–172.

    Google Scholar 

  • Saad Y. M., El Hanafy A. A., Alkarim S. A., Almehdar H. A. and Redwan E. M. 2017 Analysis of genetic variations in camel breeds (Camelus dromedarius). World Acad. Sci. Eng. Technol. Int. J. Biol. Biomol. Agric. Food Biotechnol. Eng. 11, 564–568.

    Google Scholar 

  • Satyanarayana D. S., Ahlawat S., Sharma R., Arora R., Sharma A., Tantia M. S. et al. 2022 Mitochondrial DNA diversity divulges high levels of haplotype diversity and lack of genetic structure in the Indian camels. Gene 820, 146279.

    Article  Google Scholar 

  • Spencer P. and Woolnough A. 2010 Assessment and genetic characterisation of Australian camels using microsatellite polymorphisms. Livest. Sci. 129, 241–245.

    Article  Google Scholar 

  • Tadesse Y., Costa V., Gebremariam Z., Urgae M., Tilahun S., Kebede K. et al. 2019 Genetic variability and relationship of camel (Camelus dromedarius) populations in Ethiopia as evidenced by microsatellites analysis. Ethiop. J. Agric. Sci. 29, 19–37.

    Google Scholar 

  • Tamura K., Stecher G. and Kumar S. 2021 MEGA11: molecular evolutionary genetics analysis version 11. Mol. Biol. Evol. 38, 3022–3027.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thompson J. D., Higgins D. G. and Gibson T. J. 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673–4680.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Toro M. A., Fernández J. and Caballero A. 2009 Molecular characterization of breeds and its use in conservation. Livest. Sci. 120, 174–195.

    Article  Google Scholar 

  • Wardeh M. 2004 Classification of the dromedary camels. J. Camel Sci. 1, 1–7.

    Google Scholar 

  • Wathig H. M., Galal M. Y., Ali A. M., Abdelmalik I. K., Hamid S. A. and Mohamed, K. A. 2007 Dromedary camels in Sudan, types and subtypes, distribution and movement. In Proceedings of the International Camel Conference" Recent trends in Camelids research and Future strategies for saving Camels", Rajasthan, India, 16-17 February 2007., pp 46-50: College of Veterinary & Animal Science.

  • Xueqi W., Abdussamad A. M., Ibrahim J., Sanke O. J., Olaniyi W. A., Dawuda P. M. et al. 2021 Mitochondrial DNA variation of Nigerian dromedary camel (Camelus dromedarius). Anim. Genet. 52, 570–572.

    Article  PubMed  Google Scholar 

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Acknowledgments

This research has been funded by the Scientific Research Deanship at the University of Ha’il, Saudi Arabia, through project number RD-21 095.

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Contributions

Conceptualization: FB, AJS; data curation: FB, AA, MJA, AJS, RB, HHB; formal analysis: FB, AA, MJA, HHB; methodology: FB, AA, MAl, RB; software FB, HHB, MS, MA; validation: MAl, AK, MS, RB, MA; investigation: MJA, HHB, AJSJ, MS, AK; writing - original draft: FB; writing - review and editing: FB, MJA, MS, AJS, AA, RB, HHB, MAl, MA and AK.

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Correspondence to Fevzi Bardakci.

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Corresponding editor: Steven M. Carr

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Bardakci, F., Abdelgadir, A., Alam, M.J. et al. A global evaluation of mitochondrial DNA diversity and distribution of dromedary, Camelus dromedarius from north-central Saudi Arabia. J Genet 103, 25 (2024). https://doi.org/10.1007/s12041-024-01475-9

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