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2-Alkyl-2-carboxyazetidines as γ-turn inducers: incorporation into neurotrophin fragments

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Abstract

Conveniently substituted 2-alkyl-2-carboxyazetidine amino acids have been incorporated into NGF and NT3 tetrapeptide sequences to investigate their utility as reverse turn inducers (γ- vs. β-turns). Despite the presence of an Asp residue at i position, highly preferred in β-turns, molecular modeling and NMR studies indicated that the azetidine-containing peptides mainly stabilized γ-turn conformations.

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Notes

  1. For a new nomenclature of azetidine containing amino acids (see Bonache 2006). Azx indicates any azetidine, Aze, Azk and Azo refer to Glu, Lys and Nle-derived azetidines, respectively.

References

  • Alonso de Diego SA, Muñoz P, González-Muñiz R, Herranz R, Martín-Martínez M, Cenarruzabeitia E, Frechilla D, Del Río J, Jimeno ML, García-López MT (2005) Analogues of the neuroprotective tripeptide Gly-Pro-Glu (GPE): synthesis and structure–activity relationships. Bioorg Med Chem Lett 15:2279–2283

    Article  PubMed  Google Scholar 

  • Alonso de Diego SA, Gutiérrez-Rodríguez M, Pérez de Vega MJ, González-Muñiz R, Herranz R, Martín-Martínez M, Cenarruzabeitia E, Frechilla D, Del Río J, Jimeno ML, García-López MT (2006) The neuroprotective activity of GPE tripeptide analogues does not correlate with glutamate receptor binding affinity. Bioorg Med Chem Lett 16:3396–3400

    Article  CAS  PubMed  Google Scholar 

  • Baeza JL, Gerona-Navarro G, Pérez de Vega MJ, García-López MT, González-Muñiz R, Martín-Martínez M (2008) Azetidine-derived amino acid versus proline derivatives alternative trends in reverse turn induction. J Org Chem 73:1704–1715

    Article  CAS  PubMed  Google Scholar 

  • Baeza JL, Gerona-Navarro G, Thompson K, Pérez de Vega MJ, Infantes L, García-López MT, González-Muñiz R, Martín-Martínez M (2009) Further evidences for 2-alkyl-2-carboxyazetidines as γ-turn inducers. J Org Chem 74:8203–8211

    Article  CAS  PubMed  Google Scholar 

  • Bonache MA, García-Martínez C, García de Diego L, Carreño C, Pérez de Vega MJ, Garcia-Lopez MT, Ferrer-Montiel A, Gonzalez-Muñiz R (2006) Old molecules for new receptors: Trp(Nps) dipeptide derivatives as vanilloide TRPV1 channel blockers. ChemMedChem 1:429–438

    Article  CAS  PubMed  Google Scholar 

  • Gerona-Navarro G, Bonache MA, Alías M, Pérez de Vega MJ, García-López MT, López P, Cativiela C, González-Muñiz R (2004) Simple access to novel azetidine-containing conformationally restricted amino acids by chemoselective reduction of β-lactams. Tetrahedron Lett 45:2193–2196

    Article  CAS  Google Scholar 

  • Guruprasad K, Rajkumar S (2000) β- and γ-turns in proteins revisited: a new set of amino acid turn-type dependent positional preferences and potentials. J Biosci 25:143–156

    CAS  PubMed  Google Scholar 

  • Ishimoto B, Tonan K, Ikawa S (2000) Coupling of intramolecular hydrogen bonding to the cis- to-trans isomerization of a proline imide bond of small model peptides S. Spectrochim. Acta A Mol Biomol Spectrosc 56A:201–209

    Article  CAS  Google Scholar 

  • Kessler H (1982) Conformation and biological-activity of cyclic-peptides. Angew Chem Int Ed 21:512–523

    Article  Google Scholar 

  • Longo FM, **e Y, Massa M (2005) Neurotrophin small molecule mimetics: candidate therapeutic agents for neurological disorders. Curr Med Chem Cent Nerv Syst Agents 5:29–41

    CAS  Google Scholar 

  • McDonald NQ, Lapatto R, Rust JM, Gunning J, Wlodawer A, Blundell TL (1991) New protein fold revealed by a 2.3-A resolution crystal structure of nerve growth factor. Nature 354:411–414

    Article  CAS  PubMed  Google Scholar 

  • Perez de Vega MJ, Martín-Martínez M, González-Muñiz R (2007) Modulation of protein–protein interactions by stabilizing/mimicking protein secondary structure elements. Curr Top Med Chem 7:33–62

    Article  CAS  Google Scholar 

  • Schubert M, Labudde D, Oschkinat H, Schmieder PA (2002) Software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics. J Biomol NMR 24:149–154

    Article  CAS  PubMed  Google Scholar 

  • Toniolo C (1980) Intramolecularly hydrogen-bonded peptide conformations. CRC Crit Rev Biochem 9:1–44

    Article  CAS  PubMed  Google Scholar 

  • Toniolo C, Crisma M, Formaggio F, Benedetti E, Santini A, Iacovino R, Saviano M, Di Blasio B, Pedone C, Kamphuis J (1996) Preferred conformation of peptides rich in alicyclic Cα,α-disubstituted glycines. Biopolymers 40:519–522

    Article  CAS  Google Scholar 

  • Ultsch MH, Wiesmann C, Simmons LC, Henrich J, Yang M, Reilly D, Bass SH, de Vos AM (1999) Crystal structures of the neurotrophin-binding domain of TrkA, TrkB and TrkC. J Mol Biol 290:149–159

    Article  CAS  PubMed  Google Scholar 

  • Wehrman T, He X, Raab B, Dukipatti A, Blau H, García KC (2007) Structural and mechanistic insights into nerve growth factor interactions with the TrkA and p75 receptors. Neuron 53:25–38

    Article  CAS  PubMed  Google Scholar 

  • Wiesmann C, Ultsch MH, Bass SH, de Vos AM (1999) Crystal structure of nerve growth factor in complex with the ligand-binding domain of the TrkA receptor. Nature 401:184–188

    Article  CAS  PubMed  Google Scholar 

  • Wilmot CM, Thornton JM (1988) Analysis and prediction of the different types of β-turn in proteins. J Mol Biol 203:221–232

    Article  CAS  PubMed  Google Scholar 

  • Yin H, Hamilton AD (2005) Strategies for targeting protein-protein interactions with synthetic agents. Angew Chem Int Ed 44:4130–4163

    Article  CAS  Google Scholar 

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Acknowledgments

This work has been supported by CICYT (SAF 2006-01205 and SAF2009-09323). J. L. B. was a predoctoral FPI fellow. The “Centro Técnico de Informática (CTI-CSIC)” granted computer time.

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Correspondence to Mercedes Martín-Martínez.

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Baeza, J.L., Bonache, M.Á., García-López, M.T. et al. 2-Alkyl-2-carboxyazetidines as γ-turn inducers: incorporation into neurotrophin fragments. Amino Acids 39, 1299–1307 (2010). https://doi.org/10.1007/s00726-010-0569-4

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