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Soil microbial ecology through the lens of metatranscriptomics
Metatranscriptomics uncovers the dynamic expression of functional genes in soil environments, providing insights into the intricate metabolic...
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Next Generation Sequencing in Metagenomics and Metatranscriptomics
This study explores metagenomics and metatranscriptomics, delving into the intricacies of understanding complex microbial communities through...
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Controlling taxa abundance improves metatranscriptomics differential analysis
BackgroundA common task in analyzing metatranscriptomics data is to identify microbial metabolic pathways with differential RNA abundances across...
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Metatranscriptomics, Metaproteomics, and Metabolomics Approaches for Microbiome Characterization
Every living thing has its own unique microbiome. Environmental niches are sensitive to changes in the microbiome and how those changes affect them....
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Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota
The identification of processes activated by specific microbes during microbiota colonization of plant roots has been hampered by technical...
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Metatranscriptomics-guided genome-scale metabolic reconstruction reveals the carbon flux and trophic interaction in methanogenic communities
BackgroundDespite rapid advances in genomic-resolved metagenomics and remarkable explosion of metagenome-assembled genomes (MAGs), the function of...
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Spatial metatranscriptomics resolves host–bacteria–fungi interactomes
The interactions of microorganisms among themselves and with their multicellular host take place at the microscale, forming complex networks and...
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Metagenomics and metatranscriptomics as potential driving forces for the exploration of diversity and functions of micro-eukaryotes in soil
Micro-eukaryotes are ubiquitous and play vital roles in diverse ecological systems, yet their diversity and functions are scarcely known. This may be...
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Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics
BackgroundBovine respiratory disease (BRD) is one of the most common diseases in intensively managed cattle, often resulting in high morbidity and...
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Metatranscriptomics in Microbiome Study: A Comprehensive Approach
The soil microbes are an essential component for proper functioning of terrestrial ecosystem. Due to vast diversity of the microbial population in...
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Metatranscriptomics of Plant Rhizosphere: A Promising Tool to Decipher the Role of Microorganisms in Plant Growth and Development
The plant rhizosphere is the most living and metabolically active region among all soil habitats. This is mostly because of the multifaceted...
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Advances in Biotechnological Tools and Techniques for Metatranscriptomics
To discover the novel functions and pathways in microorganisms for various reactions, a metatranscriptomics is a suitable tool. The use of...
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Usage of Metatranscriptomics to Understand Oral Disease
Metatranscriptomics is a method used to comprehensively capture bacterial activity within microbiota at the transcription level. It has become an...
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Metatranscriptomics: A Recent Advancement to Explore and Understand Rhizosphere
In this terrestrial ecosystem, plant is the major creator. With the help of composite root system, they use soil resources. Here the role of...
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Linking processes to community functions—insights into litter decomposition combining fungal metatranscriptomics and environmental NMR profiling
In forest ecosystems, decomposition is essential for carbon and nutrient cycling and therefore a key process for ecosystem functioning. During the...
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AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite
We introduce AGAMEMNON ( https://github.com/ivlachos/agamemnon ) for the acquisition of microbial abundances from shotgun metagenomics and...
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The Application of Transcriptomics, Metagenomics, and Metatranscriptomics in Algal Research
This chapter introduces the basic principles of transcriptomics and its application in algal research. The latest studies demonstrate how to use...
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Relevance of Metatranscriptomics in Symbiotic Associations Between Plants and Rhizosphere Microorganisms
Interaction between plant and microbes in the rhizosphere, the place of soil influenced with the aid of plant roots, are fundamental to...
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Microbial Metatranscriptomics Belowground
The book emphasizes role of functional microbes in soil to improve fertility and plant health in agro-ecosystem. In this compendium main emphasis is...
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Metagenomics and Metatranscriptomics Approaches in Understanding and Discovering Novel Molecules in Rhizosphere Environment
Rhizosphere microbiome is a diverse and dynamic communities affecting both plant health and nutrition. A better understanding of these ecosystems...