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Modern Tools for the Identification of Fungi, Including Yeasts
Fungi is a group of eukaryotic and multicellular heterotrophs with a wide range of diversity of phenotypic characters. Therefore, the traditional...
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Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
BackgroundSingle-cell sequencing techniques are revolutionizing every field of biology by providing the ability to measure the abundance of...
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DNA Barcoding for Species Identification in Genetically Engineered Fungi
Fungi are the most common category of organisms that can be found in both natural and human-made environments. They are involved in many important...
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High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors
Single-cell nanopore sequencing of full-length mRNAs transforms single-cell multi-omics studies. However, challenges include high sequencing errors...
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Comparative genome analysis of three euplotid protists provides insights into the evolution of nanochromosomes in unicellular eukaryotic organisms
One of the most diverse clades of ciliated protozoa, the class Spirotrichea, displays a series of unique characters in terms of eukaryotic...
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Single-cell multiomics: technologies and data analysis methods
Advances in single-cell isolation and barcoding technologies offer unprecedented opportunities to profile DNA, mRNA, and proteins at a single-cell...
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High quality de novo genome assembly of the non-conventional yeast Kazachstania bulderi describes a potential low pH production host for biorefineries
Kazachstania bulderi is a non-conventional yeast species able to grow efficiently on glucose and δ-gluconolactone at low pH. These unique traits make K...
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Barcoded multiple displacement amplification for high coverage sequencing in spatial genomics
Determining mutational landscapes in a spatial context is essential for understanding genetically heterogeneous cell microniches. Current approaches,...
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A re-assessment of Taxomyces andreanae, the alleged taxol-producing fungus, using comparative genomics
The monotypic “bulbilliferous hyphomycete” genus Taxomyces was erected in 1993 for a fungal endophyte isolated from the Yew tree Taxus brevifolia and...
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IMA Genome – F19
The pace at which Next Generation Sequence data is being produced continues to accelerate as technology improves. As a result, such data are...
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Exploring the status of global terrestrial and aquatic microbial diversity through ‘Biodiversity Informatics’
Biological scientists have established ‘Biodiversity Informatics’ to map the global diversity of biological organisms by using cutting-edge...
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Characterization of the fungal genus Sphaerellopsis associated with rust fungi: species diversity, host-specificity, biogeography, and in-vitro mycoparasitic events of S. macroconidialis on the southern corn rust, Puccinia polysora
Sphaerellopsis species are putative hyperparasites of rust fungi and may be promising biological control agents (BCA) of rust diseases. However, few...
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Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization
The species is one of the basic units of biological classification. Both species concepts and recognition are essential topics in taxonomic studies...
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Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events
The Penicillia are known to produce a wide range natural products—some with devastating outcome for the agricultural industry and others with...
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Enhancer–promoter specificity in gene transcription: molecular mechanisms and disease associations
Although often located at a distance from their target gene promoters, enhancers are the primary genomic determinants of temporal and spatial...
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Copy number alteration profiling facilitates differential diagnosis between ossifying fibroma and fibrous dysplasia of the jaws
Ossifying fibroma (OF) and fibrous dysplasia (FD) are two fibro-osseous lesions with overlap** clinicopathological features, making diagnosis...
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Dermatophytes and mammalian hair: aspects of the evolution of Arthrodermataceae
Dermatophytes and other members of Onygenales are unique in their ability to degrade keratin, affecting hair and nails, and in the case of human...
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Pseudo-chromosome—length genome assembly for a deep-sea eel Ilyophis brunneus sheds light on the deep-sea adaptation
High hydrostatic pressure, low temperature, and scarce food supply are the major factors that limit the survival of vertebrates in extreme deep-sea...
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Morpho-functional characterization, in vitro study, and tripartite interaction assay evaluate the potential of biosynthesized silver nanoparticles to manage Cercospora leaf spot disease in Vigna radiata
We investigated the anti-phytopathogen potential of silver nanoparticles synthesized by the bioreduction of AgNO 3 in Bacillus subtilis culture...
