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Accelerating all-pairs shortest path algorithms for bipartite graphs on graphics processing units
Bipartite graphs are used to model and represent many real-world problems in biological and physical sciences. Finding shortest paths in bipartite...
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Indirect all-quadrilateral meshing based on bipartite topological labeling
Quadrilateral meshes offer certain advantages compared to triangular ones, such as reduced number of elements and alignment with problem-specific...
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Zika virus RNA structure controls its unique neurotropism by bipartite binding to Musashi-1
Human RNA binding protein Musashi-1 (MSI1) plays a critical role in neural progenitor cells (NPCs) by binding to various host RNA transcripts. The...
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Mutual Witness Gabriel Drawings of Complete Bipartite Graphs
Let \(\varGamma \) be a straight-line drawing...
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The Complexity of Contracting Bipartite Graphs into Small Cycles
For a positive integer \(\ell \ge 3\) , the...
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Geo-SPS: bipartite graph representation for GeoSpatial prenatal survey data
Obstetric studies had long revealed that the human female mental state, although subjective, has a nonlinear relation to the gestation, which could...
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GPU-based butterfly counting
When dealing with large bipartite graphs, butterfly counting is a crucial and time-consuming operation. Graphics processing units (GPUs) are widely...
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kCBAC-Net: Deeply Supervised Complete Bipartite Networks with Asymmetric Convolutions for Medical Image Segmentation
Accurate and automatic medical image segmentation is challenging due to significant size and shape variations of objects (e.g., in multi-scales) and...
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3D Model Retrieval Using Bipartite Graph Matching Based on Attention
In this paper, we propose an attention-based bipartite graph 3D model retrieval algorithm, where many-to-many matching method, the weighted bipartite...
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Adaptive spectral graph wavelets for collaborative filtering
Collaborative filtering is a popular approach in recommender systems, whose objective is to provide personalized item suggestions to potential users...
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EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations
ContextProtein–protein interaction (PPI) is a key component linked to virtually all cellular processes. Be it an enzyme catalysis (‘classic type...
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Reduction of visual stimulus artifacts using a spherical tank for small, aquatic animals
Delivering appropriate stimuli remains a challenge in vision research, particularly for aquatic animals such as zebrafish. Due to the shape of the...
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DETR-SPP: a fine-tuned vehicle detection with transformer
Real-time vehicle detection is the most challenging and crucial task in intelligent transportation systems. Speed and accuracy are the most...
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Scaling the Maximum Flow Computation on GPUs
Maximum flow is one of the fundamental problems in graph theory with several applications such as bipartite matchings, image segmentation, disjoint...
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Structural basis of the T4 bacteriophage primosome assembly and primer synthesis
The T4 bacteriophage gp41 helicase and gp61 primase assemble into a primosome to couple DNA unwinding with RNA primer synthesis for DNA replication....
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Free versus bound entanglement, a NP-hard problem tackled by machine learning
Entanglement detection in high dimensional systems is a NP-hard problem since it is lacking an efficient way. Given a bipartite quantum state of...
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Algorithms on Trees and Graphs With Python Code
This textbook introduces graph algorithms on an intuitive basis followed by a detailed exposition using structured pseudocode, with correctness...
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Logically synthesized and hardware-accelerated restricted Boltzmann machines for combinatorial optimization and integer factorization
The restricted Boltzmann machine (RBM) is a stochastic neural network capable of solving a variety of difficult tasks including non-deterministic...
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Entanglement entropy from non-equilibrium Monte Carlo simulations
We study the entanglement entropy in lattice field theory using a simulation algorithm based on Jarzynski’s theorem. We focus on the entropic...