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Proteome allocation is linked to transcriptional regulation through a modularized transcriptome
It has proved challenging to quantitatively relate the proteome to the transcriptome on a per-gene basis. Recent advances in data analytics have...
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Isoform-resolved transcriptome of the human preimplantation embryo
Human preimplantation development involves extensive remodeling of RNA expression and splicing. However, its transcriptome has been compiled using...
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High-resolution transcriptome datasets during embryogenesis of plant-parasitic nematodes
Understanding the transcriptional regulatory characteristics throughout the embryogenesis of plant-parasitic nematodes is crucial for elucidating...
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Transcriptome sequencing of seven deep marine invertebrates
We present 4k video and whole transcriptome data for seven deep-sea invertebrate animals collected in the Eastern Pacific Ocean during a research...
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Entire expressed peripheral blood transcriptome in pediatric severe malarial anemia
This study on severe malarial anemia (SMA: Hb < 6.0 g/dL), a leading global cause of childhood morbidity and mortality, compares the entire expressed...
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SIGNET: transcriptome-wide causal inference for gene regulatory networks
Gene regulation plays an important role in understanding the mechanisms of human biology and diseases. However, inferring causal relationships...
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Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
Long-read sequencing technologies have improved significantly since their emergence. Their read lengths, potentially spanning entire transcripts, is...
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Spatial epigenome–transcriptome co-profiling of mammalian tissues
Emerging spatial technologies, including spatial transcriptomics and spatial epigenomics, are becoming powerful tools for profiling of cellular...
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Direct RNA sequencing coupled with adaptive sampling enriches RNAs of interest in the transcriptome
Abundant cellular transcripts occupy most of the sequencing reads in the transcriptome, making it challenging to assay for low-abundant transcripts....
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Host nasopharyngeal transcriptome dataset of a SARS-CoV-2 positive Italian cohort
The ongoing COVID-19 pandemic caused by SARS-CoV-2 has affected millions of people worldwide and has significant implications for public health. Host...
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Unsupervised analysis of whole transcriptome data from human pluripotent stem cells cardiac differentiation
The main objective of the present work was to highlight differences and similarities in gene expression patterns between different pluripotent stem...
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Transcriptome profiling of aerial and subterranean peanut pod development
Peanut ( Arachis hypogaea ) showcases geocarpic behavior, transitioning from aerial flowering to subterranean seed development. We recently obtained an...
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A multi-omics dataset of human transcriptome and proteome stable reference
The development of high-throughput omics technology has greatly promoted the development of biomedicine. However, the poor reproducibility of omics...
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Incomplete transcripts dominate the Mycobacterium tuberculosis transcriptome
Mycobacterium tuberculosis (Mtb) is a bacterial pathogen that causes tuberculosis (TB), an infectious disease that is responsible for major health...
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Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers
The role for routine whole genome and transcriptome analysis (WGTA) for poor prognosis pediatric cancers remains undetermined. Here, we characterize...
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De novo transcriptome for Chiloscyllium griseum, a long-tail carpet shark of the Indian waters
Sharks have thrived in the oceans for 400 million years, experienced five extinctions and evolved into today’s apex predators. However, enormous...
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Transcriptome analysis and development of EST-SSR markers in the mushroom Auricularia heimuer
Auricularia heimuer , the third most frequently cultivated edible mushroom species worldwide, has high medicinal value. However, a shortage of...
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Tuning of liver circadian transcriptome rhythms by thyroid hormone state in male mice
Thyroid hormones (THs) are important regulators of systemic energy metabolism. In the liver, they stimulate lipid and cholesterol turnover and...
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Comparative transcriptome profiles of four sexually size dimorphic fish
Sexual size dimorphism is widespread in fish species. Although sex growth differences in multiple species have been studied successively, the...
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Full-length transcriptome analysis of a bloom-forming dinoflagellate Prorocentrum shikokuense (Dinophyceae)
Prorocentrum shikokuense (formerly P. donghaiense ) is a pivotal dinoflagellate species associating with the HABs in the East China Sea. The...
