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Incorporating carbon dioxide into a stoichiometric producer–grazer model
Climate change models predict increases in atmospheric carbon dioxide concentration. As ecosystems equilibrate with the atmosphere, stimulation of...
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Surfing the Hyperbola Equations of the Steady-State Farquhar–von Caemmerer–Berry C3 Leaf Photosynthesis Model: What Can a Theoretical Analysis of Their Oblique Asymptotes and Transition Points Tell Us?
The asymptotes and transition points of the net CO 2 assimilation ( A / C i ) rate curves of the steady-state Farquhar–von Caemmerer–Berry (FvCB) model for...
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A Calvin Bestiary
This paper compares a number of mathematical models for the Calvin cycle of photosynthesis and presents theorems on the existence and stability of...
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A mathematical model of the photosynthetic carbon metabolism has multiple steady states under the same parameter conditions
This paper analyzes a mathematical model of the photosynthetic carbon metabolism, which incorporates not only the Calvin-Benson cycle, but also...
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MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions
BackgroundMicrO is an ontology of microbiological terms, including prokaryotic qualities and processes, material entities (such as cell components),...
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A physical-biological coupled model for algal dynamics in lakes
A coupled model is presented for simulating physical and biological dynamics in fresh water lakes. The physical model rests upon the assumption that...
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Mathematical Models in Plant Biology: An Overview
The study of plants could be undertaken at essentially every level of organization within biology, from that within a cell to the entire biosphere....
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On the dynamics of internal leaf carbon dioxide uptake
A model is proposed to investigate the hypothesis that the observed time course of whole leaf photosynthetic responses to changes in incident light...