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  1. Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin

    Heliorhodopsin releases a proton from the Schiff base during the L-state to M-state transition but not toward the protein bulk surface. Here we...

    Masaki Tsujimura, Yoshihiro Chiba, ... Hiroshi Ishikita in Communications Biology
    Article Open access 06 December 2022
  2. Directed proton transfer from Fo to F1 extends the multifaceted proton functions in ATP synthase

    The role of protons in ATP synthase is typically considered to be energy storage in the form of an electrochemical potential, as well as an operating...

    Semen V. Nesterov, Lev S. Yaguzhinsky in Biophysical Reviews
    Article 21 September 2023
  3. Tools for analyzing protonation states and for tracing proton transfer pathways with examples from the Rb. sphaeroides photosynthetic reaction centers

    Protons participate in many reactions. In proteins, protons need paths to move in and out of buried active sites. The vectorial movement of protons...

    Rongmei Judy Wei, Umesh Khaniya, ... M. R. Gunner in Photosynthesis Research
    Article 29 October 2022
  4. Mechanisms of inward transmembrane proton translocation

    Proton transport is indispensable for cell life. It is believed that molecular mechanisms of proton movement through different types of...

    Kirill Kovalev, Fedor Tsybrov, ... Valentin Gordeliy in Nature Structural & Molecular Biology
    Article 29 June 2023
  5. Comparison of proton transfer paths to the QA and QB sites of the Rb. sphaeroides photosynthetic reaction centers

    The photosynthetic bacterial reaction centers from purple non-sulfur bacteria use light energy to drive the transfer of electrons from cytochrome c ...

    Rongmei Judy Wei, Yingying Zhang, ... M. R. Gunner in Photosynthesis Research
    Article 28 March 2022
  6. Identification of amino acid residues in a proton release pathway near the bacteriochlorophyll dimer in reaction centers from Rhodobacter sphaeroides

    Insight into control of proton transfer, a crucial attribute of cellular functions, can be gained from investigations of bacterial reaction centers....

    J. P. Allen, K. D. Chamberlain, J. C. Williams in Photosynthesis Research
    Article 05 October 2022
  7. Structural, Functional and Molecular Dynamics Examination of a de novo cloned Otopetrin-like Proton Channel in crayfish

    Proton channels play a crucial role in many biological functions, as they are responsible for the selective transport of protons across cell...

    Mustafa Erdem Sağsöz, Berk Sağlam, ... Nuhan Puralı in Cell Biochemistry and Biophysics
    Article 29 May 2024
  8. Energetics and dynamics of the proton shuttle of carbonic anhydrase II

    Human carbonic anhydrase II catalyzes the reversible reaction of carbon dioxide and water to form bicarbonate and a proton. His64-mediated proton...

    Heiner N. Raum, Suzanne Zoë Fisher, Ulrich Weininger in Cellular and Molecular Life Sciences
    Article Open access 09 September 2023
  9. Features of the Mechanism of Proton Transport in ESR, Retinal Protein from Exiguobacterium sibiricum

    Abstract

    Retinal-containing light-sensitive proteins – rhodopsins – are found in many microorganisms. Interest in them is largely explained by their...

    Lada E. Petrovskaya, Sergei A. Siletsky, ... Mikhail P. Kirpichnikov in Biochemistry (Moscow)
    Article Open access 26 October 2023
  10. Proton-transfer-reaction mass spectrometry (PTR-MS) for online monitoring of glucose depletion and cell concentrations in HEK 293 gene therapy processes

    Objectives

    The applicability of proton-transfer-reaction mass spectrometry (PTR-MS) as a versatile online monitoring tool to increase consistency and...

    Benjamin Bayer, Andreas Maccani, ... Juan A. Hernandez Bort in Biotechnology Letters
    Article Open access 12 November 2021
  11. Proton boron capture therapy (PBCT) induces cell death and mitophagy in a heterotopic glioblastoma model

    Despite aggressive therapeutic regimens, glioblastoma (GBM) represents a deadly brain tumor with significant aggressiveness, radioresistance and...

    Francesco Paolo Cammarata, Filippo Torrisi, ... Giacomo Cuttone in Communications Biology
    Article Open access 08 April 2023
  12. Proton-pum** photoreceptor controls expression of ABC transporter by regulating transcription factor through light

    Light is a significant factor for living organisms with photosystems, like microbial rhodopsin—a retinal protein that functions as an ion pump,...

    **-gon Shim, Kimleng Chuon, ... Kwang-Hwan Jung in Communications Biology
    Article Open access 29 June 2024
  13. Deep learning driven de novo drug design based on gastric proton pump structures

    Existing drugs often suffer in their effectiveness due to detrimental side effects, low binding affinity or pharmacokinetic problems. This may be...

    Kazuhiro Abe, Mami Ozako, ... Atsushi Yoshimori in Communications Biology
    Article Open access 19 September 2023
  14. β subunits of GABAA receptors form proton-gated chloride channels: Insights into the molecular basis

    Gamma-aminobutyric acid type A receptors (GABA A Rs) are ligand gated channels mediating inhibition in the central nervous system. Here, we identify a...

    Aleksandra Garifulina, Theres Friesacher, ... Steffen Hering in Communications Biology
    Article Open access 03 August 2022
  15. Evolutionary diversity of proton and water channels on the oxidizing side of photosystem II and their relevance to function

    One of the reasons for the high efficiency and selectivity of biological catalysts arise from their ability to control the pathways of substrates and...

    Rana Hussein, Mohamed Ibrahim, ... Junko Yano in Photosynthesis Research
    Article Open access 02 June 2023
  16. Introduction of a Sodium-Binding Motif into Subunits a and c of Bacillus sp. PS3 Proton F-ATPase Does Not Result in Sodium Specificity of the Enzyme

    Abstract

    In bacteria, F-type ATPase (F-ATPase) plays a key role in bioenergetics and couples ATP synthesis/hydrolysis with the transport of ions (H + ...

    S. M. Bruman, A. V. Litvin, ... B. A. Feniouk in Microbiology
    Article 14 May 2024
  17. Electron Transport in Chloroplasts: Regulation and Alternative Pathways of Electron Transfer

    Abstract

    This work represents an overview of electron transport regulation in chloroplasts as considered in the context of structure-function...

    Alexander N. Tikhonov in Biochemistry (Moscow)
    Article 26 October 2023
  18. Multiple mechanisms contribute to fluorometry signals from the voltage-gated proton channel

    Voltage-clamp fluorometry (VCF) supplies information about the conformational changes of voltage-gated proteins. Changes in the fluorescence...

    Ferenc Papp, Gilman E. S. Toombes, ... Zoltan Varga in Communications Biology
    Article Open access 26 October 2022
  19. Inhibition of key DNA double strand break repair protein kinases enhances radiosensitivity of head and neck cancer cells to X-ray and proton irradiation

    Ionising radiation (IR) is widely used in cancer treatment, including for head and neck squamous cell carcinoma (HNSCC), where it induces significant...

    Maria Rita Fabbrizi, Thomas J. Doggett, ... Jason L. Parsons in Cell Death Discovery
    Article Open access 12 June 2024
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