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  1. Microscopic Counting of the Total Number of Bacteria and Metabolically Active Bacteria in Soil Samples: Their Relationship and Oscillation Dynamics of Number

    Abstract

    Experimental results of daily counting under a microscope for 30 days of prokaryotic cells in preparations from soil samples when stained...

    A. M. Semenov, A. A. Shatalov, E. V. Semenova in Biology Bulletin Reviews
    Article 18 April 2024
  2. Mutation of the wheat homeobox gene Grain Number Increase 1 increases grain number and grain yield but decreases grain protein content

    Inflorescence structure affects final grain yield (GY) in wheat ( Triticum aestivum L.). Recent breeding efforts have focused on improving grain...

    Shun Sakuma, Naho Rokuhara, ... Hiroyuki Tanaka in Euphytica
    Article 28 March 2024
  3. Improving hybrid rice breeding programs via stochastic simulations: number of parents, number of hybrids, tester update, and genomic prediction of hybrid performance

    Key message

    Schemes that use genomic prediction outperform others, updating testers increases hybrid genetic gain, and larger population sizes tend to...

    Roberto Fritsche-Neto, Jauhar Ali, ... Marlee Rose Labroo in Theoretical and Applied Genetics
    Article Open access 12 December 2023
  4. Chromosomal map** of a major genetic locus from Agropyron cristatum chromosome 6P that influences grain number and spikelet number in wheat

    Key message

    A novel locus on Agropyron cristatum chromosome 6P that increases grain number and spikelet number was identified in wheat– A. cristatum ...

    Yida Lin, Shenghui Zhou, ... Lihui Li in Theoretical and Applied Genetics
    Article 15 March 2024
  5. Fruit and Chromosome Number

    Mora de Castilla fruits consist of an aggregation of drupelets, each containing a tiny seed. The 1–2-cm-long drupelets are linked to a central...
    Chapter 2023
  6. Increasing Seed Number

    High correlations are often observed between yield and plant seed number. These correlations are frequently interpreted as indicating a causal...
    Thomas Sinclair, Thomas W. Rufty in Bringing Skepticism to Crop Science
    Chapter 2022
  7. Closing the gap between the number of Phytophthora species isolated through baiting a soil sample and the number revealed through metabarcoding

    This review assesses possible reasons for the discrepancy between the high numbers of Phytophthora species and putative new species isolated from...

    Suchana R. Sarker, Treena I. Burgess, ... Jen McComb in Mycological Progress
    Article Open access 08 May 2023
  8. Estimating the number of sequencing errors in microbial diversity studies

    Species diversity analysis of microbial communities is an important tool for assessing an ecosystem health. The advent of high-throughput genome...

    Davide Di Cecco, Andrea Tancredi in Environmental and Ecological Statistics
    Article 30 April 2024
  9. Engineering plasmid copy number heterogeneity for dynamic microbial adaptation

    Natural microbial populations exploit phenotypic heterogeneity for survival and adaptation. However, in engineering biology, limiting the sources of...

    Shalni Kumar, Andrew Lezia, Jeff Hasty in Nature Microbiology
    Article 18 June 2024
  10. Identification of superior and rare haplotypes to optimize branch number in soybean

    Key message

    Using the integrated approach in the present study, we identified eleven significant SNPs, seven stable QTLs and 20 candidate genes...

    Hui Yu, Javaid Akhter Bhat, ... **anzhong Feng in Theoretical and Applied Genetics
    Article Open access 03 April 2024
  11. Identification and validation of quantitative trait loci for fertile spikelet number per spike and grain number per fertile spikelet in bread wheat (Triticum aestivum L.)

    Key message

    A major and stable QTL for fertile spikelet number per spike and grain number per fertile spikelet identified in a 4.96-Mb interval on...

    Cheng Jiang, Zhibin Xu, ... Tao Wang in Theoretical and Applied Genetics
    Article 23 March 2023
  12. Completing a genomic characterisation of microscopic tumour samples with copy number

    Background

    Genomic insights in settings where tumour sample sizes are limited to just hundreds or even tens of cells hold great clinical potential,...

    Joel Nulsen, Nosheen Hussain, ... Ahmed Ashour Ahmed in BMC Bioinformatics
    Article Open access 30 November 2023
  13. Singleton-based species names and fungal rarity: Does the number really matter?

    Fungi are among the least known organisms on earth, with an estimated number of species between 1.5 and 10 million. This number is expected to be...

    Jonathan Cazabonne, Allison K. Walker, ... Danny Haelewaters in IMA Fungus
    Article Open access 20 March 2024
  14. The wall-associated kinase GWN1 controls grain weight and grain number in rice

    Grain size is a crucial agronomic trait that determines grain weight and final yield. Although several genes have been reported to regulate grain...

    Zhiqi Ma, **li Miao, ... Zhanying Zhang in Theoretical and Applied Genetics
    Article 07 June 2024
  15. Finding the number of latent states in hidden Markov models using information criteria

    Hidden Markov models (HMMs) are often used to model time series data and are applied in many fields of research. However, estimating the unknown...

    Jodie Buckby, Ting Wang, ... Kazushige Obara in Environmental and Ecological Statistics
    Article 22 November 2023
  16. Control-FREEC viewer: a tool for the visualization and exploration of copy number variation data

    Background

    Copy number alterations (CNAs) are genetic changes commonly found in cancer that involve different regions of the genome and impact cancer...

    Valentina Crippa, Emanuela Fina, ... Rocco Piazza in BMC Bioinformatics
    Article Open access 14 February 2024
  17. Rootstock Affects the Number of Flowers in the Floral Bud in Sweet Cherries

    In fruit cultivation, each flower is a fruit if it sets fruit. For this reason, the number of flowers in each floral bud is an important factor...

    Dilek Soysal, Derviş Emre Doğan, ... Hüsnü Demirsoy in Erwerbs-Obstbau
    Article 03 March 2023
  18. vamos: variable-number tandem repeats annotation using efficient motif sets

    Roughly 3% of the human genome is composed of variable-number tandem repeats (VNTRs): arrays of motifs at least six bases. These loci are highly...

    **gwen Ren, Bida Gu, Mark J. P. Chaisson in Genome Biology
    Article Open access 27 July 2023
  19. Most Probable Number (MPN) Method for Enumeration of Soil Protists

    The most probable number (MPN) technique has been widely used to enumerate environmental microorganisms, including soil protists. This...
    Protocol 2024
  20. Diffuse large B-cell lymphoma with DNA copy number changes in a Japanese black calf

    A 2-month-old Japanese Black calf exhibited mandibular and superficial cervical lymph node swelling. Fine needle aspiration cytology of the...

    Masaki Maezawa, Ken-ichi Watanabe, ... Hisashi Inokuma in Veterinary Research Communications
    Article Open access 05 April 2024
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