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Chromosome-Length Haplotypes with StrandPhaseR and Strand-seq
Dense local haplotypes can now readily be extracted from long-read or droplet-based sequence data. However, these methods struggle to combine...
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New haplotypes of honey bees (Apis spp.) in Kerala, India—identification by mitochondrial gene and its genetic similarity to South East Asian haplotypes
The geographic connections and biogeography of Apis spp. have been explored extensively, but the Indian bee populations have not been much examined...
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Characterizing stay-green in barley across diverse environments: unveiling novel haplotypes
Key messageThere is variation in stay-green within barley breeding germplasm, influenced by multiple haplotypes and environmental conditions. The...
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Population dynamics of potentially harmful haplotypes: a pedigree analysis
BackgroundThe identification of low-frequency haplotypes, never observed in homozygous state in a population, is considered informative on the...
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Superior haplotypes of key drought-responsive genes reveal opportunities for the development of climate-resilient rice varieties
Haplotype-based breeding is an emerging and innovative concept that enables the development of designer crop varieties by exploiting and exploring...
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Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.)
Pigeonpea ( Cajanus cajan L.) is an important source of quality dietary protein for over a billion people worldwide. The seeds of pigeonpea contain...
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Occurrence and distribution of CYP51 haplotypes of Zymoseptoria tritici in recent years in Europe
Septoria tritici blotch (STB), caused by the pathogen Zymoseptoria tritici , is one of the most devastating diseases of wheat worldwide. Foliar...
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Determining Complete Chromosomal Haplotypes by mLinker
Haplotype (“haploid genotype”) phase is the combination of genotypes at sites of genetic variation along a chromosome [1]. We previously demonstrated...
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Unique Haplotypes of Artemia salina (Crustacea, Branchiopoda, Anostraca) in Hypersaline Lake Sasyk-Sivash (Crimea)
AbstractThe genetic structure of the population of Artemia salina (L., 1758) species from the hypersaline Lake Sasyk-Sivash was studied based on a...
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Haplotypes distribution and virulence of Gnomoniopsis castaneae in Italy
In the last decades, productivity of Italian chestnut groves has been seriously impacted by the infection of the emerging fungal pathogen Gnomoniopsis...
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Genetic haplotypes associated with immune response to Leishmania infantum infection in dogs
Leishmaniasis is a zoonotic parasitic disease, and the main reservoir of the parasite is the dog, although recent years have seen an increase in...
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Identification of superior haplotypes for flowering time in pigeonpea through candidate gene-based association study of a diverse minicore collection
Key MessageIn current study candidate gene (261 genes) based association map** on 144 pigeonpea accessions for flowering time and related traits...
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Genome-wide association study for cashmere traits in Inner Mongolia cashmere goat population reveals new candidate genes and haplotypes
BackgroundThe cashmere goat industry is one of the main pillars of animal husbandry in Inner Mongolia Autonomous Region, and plays an irreplaceable...
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Meta-QTL analysis enabled identification of candidate genes and haplotypes for enhancing biotic stress resistance in chickpea
Fusarium wilt, Ascochyta blight and Botrytis grey mould caused by fungal pathogens are major biotic stresses that lead to 100% yield loss in chickpea...
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Pectin methylesterase activities in reproductive tissues of maize plants with different haplotypes of the Ga1 and Ga2 cross incompatibility systems
Key messageTotal PME activity in reproductive tissues was related to haplotypes at maize cross incompatibility loci, suggesting that these loci...
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Current status of Nosema spp. infection cases in apis mellifera in eurasian countries and Ptp3 gene haplotypes in the Republic of Tatarstan, Russia
The current status of Nosema spp. infections in A. mellifera throughout Eurasia was characterized using electronic databases. Although N. ceranae was...
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Features and applications of haplotypes in crop breeding
Climate change with altered pest-disease dynamics and rising abiotic stresses threatens resource-constrained agricultural production systems...
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Molecular analyses of mitochondrial DNA reveal new haplotypes and lineages within Ethiopian honeybees (Apis mellifera)
A sequence of the COI-COII intergenic region of the mitochondrial DNA of honeybees ( Apis mellifera ) was conducted to characterize the genetic basis...
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Identification of effective alleles and haplotypes conferring pre-harvest sprouting resistance in winter wheat cultivars
BackgroundPre-harvest sprouting (PHS) is a serious limiting factor for wheat ( Triticum aestivum L.) grain yield and end-use quality. Identification...
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Profiling of Fusarium head blight resistance QTL haplotypes through molecular markers, genoty**-by-sequencing, and machine learning
Key messageMarker-assisted selection is important for cultivar development. We propose a system where a training population genotyped for QTL and...
