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Transposable Elements Methods and Protocols
The volume presents a small selection of state-of-the-art approaches for studying transposable elements(TE). Chapters guide readers through HTS-based...
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Transposable Elements II: Insertional Mutagenesis
This chapter is a sequel to the topic of transposable elements discussed in Chap. 5 . Here, we will...
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Epigenetic Manipulation of Transposable and Repetitive Elements
This protocol describes methods to design, assemble, and validate tools for targeted activation or repression of single-copy and multi-copy genes,...
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Annotation and Comparative Genomics of Prokaryotic Transposable Elements
The data generated in nearly 30 years of bacterial genome sequencing has revealed the abundance of transposable elements (TE) and their importance in...
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Comparative Analysis of Transposable Elements Reveals the Diversity of Transposable Elements in Decapoda and Their Effects on Genomic Evolution
Transposable elements (TEs) are mobile genetic elements that exist in the host genome and exert considerable influence on the evolution of the host...
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Transposable Elements in Pines
The importance of mobile genetic elements or transposons in genome evolution and adaptation is being increasingly recognized. Transposons were shown...
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Selection signatures and population dynamics of transposable elements in lima bean
The domestication process in lima bean ( Phaseolus lunatus L.) involves two independent events, within the Mesoamerican and Andean gene pools. This...
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The Roles of Transposable Elements in Transgenerational Inheritance and Genome Evolution
Transposable elements and related DNA sequences, such as remnants of retrotransposons, constitute a substantial portion of eukaryotic genomes. The...
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Regulation and function of transposable elements in cancer genomes
Over half of human genomic DNA is composed of repetitive sequences generated throughout evolution by prolific mobile genetic parasites called...
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Diversity and evolution of transposable elements in the plant-parasitic nematodes
BackgroundTransposable elements (TEs) are mobile DNA sequences that propagate within genomes, occupying a significant portion of eukaryotic genomes...
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Annotation of transposable elements in the transcriptome of the Neotropical brown stink bug Euschistus heros and its chromosomal distribution
Transposable elements (TEs) are DNA sequences capable of moving within the genome. Their distribution is very dynamic among organisms, and despite...
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Taming transposable elements in livestock and poultry: a review of their roles and applications
Livestock and poultry play a significant role in human nutrition by converting agricultural by-products into high-quality proteins. To meet the...
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Transposable elements activation triggers necroptosis in mouse embryonic stem cells
Deficiency of the histone H3K9 methyltransferase SETDB1 induces RIPK3-dependent necroptosis in mouse embryonic stem cells (mESCs). However, how...
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The role of transposable elements in aging and cancer
Transposable elements (TEs) constitute a large portion of the human genome. Various mechanisms at the transcription and post-transcription levels...
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Transposable element finder (TEF): finding active transposable elements from next generation sequencing data
BackgroundDetection of newly transposed events by transposable elements (TEs) from next generation sequence (NGS) data is difficult, due to their...
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A DNA demethylase reduces seed size by decreasing the DNA methylation of AT-rich transposable elements in soybean
Understanding how to increase soybean yield is crucial for global food security. The genetic and epigenetic factors influencing seed size, a major...
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capTEs enables locus-specific dissection of transcriptional outputs from reference and nonreference transposable elements
Transposable elements (TEs) serve as both insertional mutagens and regulatory elements in cells, and their aberrant activity is increasingly being...
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Precise and Scarless Insertion of Transposable Elements by Cas9-Mediated Genome Engineering
Transposable element insertions can have broad effects on gene expression, ranging from new regulatory functions to pathogenic consequences by...
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Transposable elements potentiate radiotherapy-induced cellular immune reactions via RIG-I-mediated virus-sensing pathways
Radiotherapy (RT) plus immunotherapy is a promising modality; however, the therapeutic effects are insufficient, and the molecular mechanism requires...
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Non-Mendelian Genetics: Finding of Transposable Elements in Corns and Flies
The essence of Mendelian genetics is the rule of chromosome segregation and the independent assortment of different chromosomes. However, genes on...