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  1. GTM-decon: guided-topic modeling of single-cell transcriptomes enables sub-cell-type and disease-subtype deconvolution of bulk transcriptomes

    Cell-type composition is an important indicator of health. We present Guided Topic Model for deconvolution (GTM-decon) to automatically infer...

    Lakshmipuram Seshadri Swapna, Michael Huang, Yue Li in Genome Biology
    Article Open access 18 August 2023
  2. A novel multiple kernel fuzzy topic modeling technique for biomedical data

    Background

    Text mining in the biomedical field has received much attention and regarded as the important research area since a lot of biomedical data...

    Junaid Rashid, Jungeun Kim, ... Sapna Juneja in BMC Bioinformatics
    Article Open access 12 July 2022
  3. Use of proteomic-based MALDI-TOF mass spectra for identification of bacterial pathogens in aquaculture: a review

    The fisheries and aquaculture sectors are growing rapidly, reflecting their importance in meeting the ever-increasing human population’s demands for...

    İfakat Tülay Çağatay in Aquaculture International
    Article Open access 14 May 2024
  4. Vaginal microbiome topic modeling of laboring Ugandan women with and without fever

    The composition of the maternal vaginal microbiome influences the duration of pregnancy, onset of labor, and even neonatal outcomes. Maternal...

    Mercedeh Movassagh, Lisa M. Bebell, ... Joseph N. Paulson in npj Biofilms and Microbiomes
    Article Open access 10 September 2021
  5. Could olfactory identification be a prognostic factor in detecting cognitive impairment risk in the elderly?

    Aging contributes to the deterioration of the olfactory system in humans. Several studies indicate that the olfactory identification test alone may...

    Alice Helena Delgado-Lima, Jaime Bouhaben, ... María Luisa Delgado-Losada in GeroScience
    Article Open access 21 April 2023
  6. Course Unit 3: Deepening the Topic of Breath Meditation

    Stress is a constant companion in a time when efficiency and productivism are becoming increasingly important. What many know: Multitasking does not...
    Darko Jekauc, Lea Mülberger, Susanne Weyland in Mindfulness Training in Sport
    Chapter 2024
  7. Publication characteristics, topic trends and knowledge domains of karst ecological restoration: a bibliometric and knowledge map** analysis from 1991 to 2021

    Aims

    Karst ecological restoration (KER) publication characteristics, topic trends, and knowledge domains were analysed to provide a global perspective.

    ...
    Kehui Liu, **ao** Guan, ... Fangming Yu in Plant and Soil
    Article 11 March 2022
  8. Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction

    Identification of attractors, that is, stable states and sustained oscillations, is an important step in the analysis of Boolean models and...
    Elisa Tonello, Loïc Paulevé in Computational Methods in Systems Biology
    Conference paper 2023
  9. Potential sources of water contamination in Sulaymaniyah city hospitals: isolation and identification of non-fermentative gram-negative bacteria

    The World Health Organization guidelines prioritize the detection of coliform bacteria as indicators of water contamination. However,...

    Seenaa Muhammed Ali, Sarkhell Araz Fadhl, Salar Ibrahim Ali in Biologia
    Article 10 October 2023
  10. Documentation of iron Monosulfide Improves Hydric soil Identification in Semi-arid Wetlands

    Hydric soils identification is a key component of wetland delineation and management in the United States. However, some hydric soils fail to exhibit...

    Chelsea Duball, Karen Vaughan, ... Jacob F. Berkowitz in Wetlands
    Article 14 March 2023
  11. Multimodality Tests for Gene-Based Identification of Oncological Patients

    Personalized medicine in cancer treatment is based on knowledge of the RNA levels of a set of genes that are deregulated as a consequence of the...
    Jose Ameijeiras-Alonso, Rosa M. Crujeiras in Statistical Methods at the Forefront of Biomedical Advances
    Chapter 2023
  12. Some Methodological Approaches to the Identification of Heat-Resistant Genotypes of Crop Plants (by the Example of Cereals)

    Abstract

    The problem of resistance of crop plants to heat (as an effect of elevated air temperatures leading to physiological drought) is extremely...

    N. N. Kruglova, A. E. Zinatullina in Biology Bulletin Reviews
    Article 04 August 2023
  13. Identification of non-coding silencer elements and their regulation of gene expression

    Cell type- and differentiation-specific gene expression is precisely controlled by genomic non-coding regulatory elements (NCREs), which include...

    Baoxu Pang, Jan H. van Weerd, ... Michael P. Snyder in Nature Reviews Molecular Cell Biology
    Article 07 November 2022
  14. Selection and molecular identification of specific entomopathogens in South Sulawesi and the pathogenicity to fall armyworm (Spodoptera frugiperda JE. Smith) (Lepidoptera: Noctuidae)

    Background

    Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae), known as fall armyworm (FAW), is a wide-scale invasion pest that resulted in...

    Erwin Najamuddin, Amelia Sebayang, ... Hasbi in Egyptian Journal of Biological Pest Control
    Article Open access 22 April 2024
  15. Cell Cycle–Specific Protein Phosphatase 1 (PP1) Substrates Identification Using Genetically Modified Cell Lines

    The identification of protein phosphatase 1 (PP1) holoenzyme substrates has proven to be a challenging task. PP1 can form different holoenzyme...
    Dorothee C Kommer, Konstantinos Stamatiou, Paola Vagnarelli in Cell Cycle Control
    Protocol 2024
  16. Challenges of Species Identification for Parasitic Helminths

    Species are the fundamental units of systematicsSystematics, biodiversity, and ecological and evolutionary studies, but their delimitation has been...
    Urusa Thaenkham, Kittipong Chaisiri, Abigail Hui En Chan in Molecular Systematics of Parasitic Helminths
    Chapter 2022
  17. Identification of RNA structures and their roles in RNA functions

    The development of high-throughput RNA structure profiling methods in the past decade has greatly facilitated our ability to map and characterize...

    **nang Cao, Yueying Zhang, ... Yue Wan in Nature Reviews Molecular Cell Biology
    Article 26 June 2024
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