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  1. Structural Analyses of the Glycolipids in Lipid Rafts

    Lipid rafts are usually isolated from cells or tissues using sucrose gradient ultracentrifugation in the presence of detergents such as Triton X-100...
    Yusuke Suzuki, Kazuya Kabayama in Glycolipids
    Protocol 2023
  2. Microbial Communities: Structural and Functional Analyses with Molecular Biological Approach

    Identification and classification are now largely based on sequence analyses of ribosomal RNA (rRNA) or the rDNA encoding it, as well as genes of...
    Walter Reineke, Michael Schlömann in Environmental Microbiology
    Chapter 2023
  3. Cotranscriptional Assembly and Native Purification of Large RNA–RNA Complexes for Structural Analyses

    Recent technological developments such as cryogenic electron microscopy (Cryo-EM) and X-ray free electron lasers (XFEL) have significantly expanded...
    Krishna P. Sapkota, Shuang Li, **wei Zhang in RNA Structure and Dynamics
    Protocol 2023
  4. A computational approach for structural and functional analyses of disease-associated mutations in the human CYLD gene

    Tumor suppressor cylindromatosis protein (CYLD) regulates NF-κB and JNK signaling pathways by cleaving K63-linked poly-ubiquitin chain from its...

    Arpita Singha Roy, Tasmiah Feroz, ... Md Shahadat Hossain in Genomics & Informatics
    Article Open access 31 May 2024
  5. Genome-wide map** and cryo-EM structural analyses of the overlap** tri-nucleosome composed of hexasome-hexasome-octasome moieties

    The nucleosome is a fundamental unit of chromatin in which about 150 base pairs of DNA are wrapped around a histone octamer. The overlap**...

    Masahiro Nishimura, Takeru Fujii, ... Hitoshi Kurumizaka in Communications Biology
    Article Open access 08 January 2024
  6. Structural Analyses of Bacterial Effectors by X-Ray Crystallography

    X-ray crystallography is a method of choice to determine and analyze protein structures. Although large complexes are challenging to crystallize and...
    Chloé Dugelay, Virginie Gueguen-Chaignon, Laurent Terradot in Bacterial Secretion Systems
    Protocol 2024
  7. Structural and functional analyses of Burkholderia pseudomallei BPSL1038 reveal a Cas-2/VapD nuclease sub-family

    Burkholderia pseudomallei is a highly versatile pathogen with ~25% of its genome annotated to encode hypothetical proteins. One such hypothetical...

    Sofiyah Shaibullah, Nurshahirah Shuhaimi, ... Chyan Leong Ng in Communications Biology
    Article Open access 08 September 2023
  8. Comparative protein structural analyses of α-synuclein linked pathogenic variants reveal the role of N-terminally located critical region in Parkinson’s disease pathogenesis

    SNCA was the first gene to be linked to Parkinson's disease (PD). Pathogenic variations in the corresponding neuronal protein α-synuclein are known...

    Kashifa Akhtar Mughal, Aiman Khan, ... Amir Ali Abbasi in Biologia
    Article 11 June 2024
  9. Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

    Background

    The ShK toxin from Stichodactyla helianthus has established the therapeutic potential of sea anemone venom peptides, but many...

    Lauren M. Ashwood, Khaled A. Elnahriry, ... Peter J. Prentis in BMC Biology
    Article Open access 24 May 2023
  10. Structural and functional analyses explain Pea KAI2 receptor diversity and reveal stereoselective catalysis during signal perception

    KAI2 proteins are plant α/β hydrolase receptors which perceive smoke-derived butenolide signals and endogenous, yet unidentified KAI2-ligands (KLs)....

    Angelica M. Guercio, Salar Torabi, ... Nitzan Shabek in Communications Biology
    Article Open access 11 February 2022
  11. Molecular genetics, neuroimaging outcomes, and structural analyses of novel and recurrent variants of WDR62 gene in two consanguineous Pakistani families with autosomal recessive primary microcephaly

    Background

    Autosomal recessive primary microcephaly (MCPH) is a rare neurodevelopmental and genetically heterogeneous disorder, characterized by small...

    Komal Aslam, Aysha Saeed, ... Iram Anjum in Molecular Biology Reports
    Article 26 June 2024
  12. Advances in Structural Bioinformatics

    Structural bioinformatics is a captivating discipline that delves into the intricate realm related to proteins, RNA, and DNA, the macromolecules of...
    Juveriya Israr, Shabroz Alam, ... Ajay Kumar in Advances in Bioinformatics
    Chapter 2024
  13. Structural and Functional Analyses of the Flavoprotein Disulfide Reductase FN0820 of Fusobacterium nucleatum

    Escherichia coli RclA and Staphylococcus aureus MerA are part of the Group I flavoprotein disulfide reductase (FDR) family and have been implicated...

    Hyunwoo Shin, Yeong** Baek, ... Nam-Chul Ha in Journal of Microbiology
    Article 20 December 2023
  14. Probing RNA Structures and Interactions Using Fluorescence Lifetime Analyses

    Structural analyses of large, complex noncoding RNAs continue to lag behind their rapid discovery and functional descriptions. Site-specifically...
    Protocol 2023
  15. Microbial Communities: Structural and Functional Analyses with Classical Approach

    Microorganisms are involved in numerous processes in the environment in a desirable or undesirable manner. At the same time, they practically never...
    Walter Reineke, Michael Schlömann in Environmental Microbiology
    Chapter 2023
  16. Advanced Methods in Structural Biology

    This volume explores the latest integrated bioprocesses and technologies used to study the production of the target recombinant protein of...

    Ângela Sousa, Luis Passarinha in Methods in Molecular Biology
    Book 2023
  17. Species and structural diversity of trees at the structural type level

    Background

    Species and structural diversity are important for understanding the formation of forest communities, key ecological processes, and...

    Yuanfa Li, Liting Wei in BMC Ecology and Evolution
    Article Open access 28 March 2024
  18. Structural features of fungal genomes

    Eighteen fungal genomes have been sequenced to date from a variety of taxonomic groups, with fifteen Ascomycota, two Basidomycota and one...
    Phatthanaphong Wanchanthuek, Peter F. Hallin, ... David Ussery in Comparative Genomics
    Chapter
  19. Comparative Analyses of Bacteriophage Genomes

    Bacterial viruses (bacteriophages or phages) are the most abundant and diverse biological entities on Earth. There is a renewed worldwide interest in...
    Fernando Pacheco Nobre Rossi, Vinicius Sousa Flores, ... Aline Maria da Silva in Comparative Genomics
    Protocol 2024
  20. Structural Characterization of Peptide Antibodies

    The role of proteins as very effective immunogens for the generation of antibodies is indisputable. Nevertheless, cases in which protein usage for...
    Anna Chailyan, Paolo Marcatili in Peptide Antibodies
    Protocol 2024
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