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Heuristic shortest hyperpaths in cell signaling hypergraphs
BackgroundCell signaling pathways, which are a series of reactions that start at receptors and end at transcription factors, are basic to systems...
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A systematic study of critical miRNAs on cells proliferation and apoptosis by the shortest path
BackgroundMicroRNAs are a class of important small noncoding RNAs, which have been reported to be involved in the processes of tumorigenesis and...
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Colonies of the Eastern Tent Caterpillar Malacosoma americanum (Lepidoptera:Lasiocampidae) Abandon Trails to Depleted Feeding Sites and Follow the Most Direct and Shortest Pathways Between their Tent and Food-Finds
Laboratory studies were conducted to determine the ability of colonies of the eastern tent caterpillar, Malacosoma Americanum ...
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Disarrangement and reorganization of the hippocampal functional connectivity during the spatial path adjustment of pigeons
BackgroundThe hippocampus plays an important role to support path planning and adjustment in goal-directed spatial navigation. While we still only...
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Path-level interpretation of Gaussian graphical models using the pair-path subscore
BackgroundConstruction of networks from cross-sectional biological data is increasingly common. Many recent methods have been based on Gaussian...
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A fast and efficient path elimination algorithm for large-scale multiple common longest sequence problems
BackgroundIn various fields, searching for the Longest Common Subsequences (LCS) of Multiple (i.e., three or more) sequences (MLCS) is a classic but...
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HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey
BackgroundOntology-based semantic similarity measures based on SNOMED-CT, MeSH, and Gene Ontology are being extensively used in many applications in...
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Shortest path counting in probabilistic biological networks
BackgroundBiological regulatory networks, representing the interactions between genes and their products, control almost every biological activity in...
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Ant foraging path use responds to different types of risk and their encounter probabilities
Ant colonies are likely able to access food locations by multiple paths that can vary predictably in length or mortality risk. To favor one path over...
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Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants
We demonstrate a novel methodology that integrates intuitive modelling, simulation, and formal verification of collective behaviour in biological...
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No food left behind: foraging route choices among free-ranging Japanese macaques (Macaca fuscata) in a multi-destination array at the Awajishima Monkey Center, Japan
Animals must make route choices every day when moving through their habitat while foraging. Choosing an optimal route can be cognitively costly, and...
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Assessment of playa wetland network connectivity for amphibians of the south-central Great Plains (USA) using graph-theoretical, least-cost path, and landscape resistance modelling
ContextLand-cover changes are likely affecting structural and functional connectivity for wetland-associated wildlife among the > 80,000 playa of the...
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Three-dimensional branch segmentation and phenotype extraction of maize tassel based on deep learning
BackgroundThe morphological structure phenotype of maize tassel plays an important role in plant growth, reproduction, and yield formation. It is an...
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Estimating wildlife utilization distributions using randomized shortest paths
ContextIncorporating hard and soft barriers into individual space-use measures in wildlife tracking studies remains an ongoing challenge in movement...
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Habitat connectivity of threatened ungulate species in a native savanna landscape of northern South America
The native savanna ecosystem of the Orinoquia region is the habitat of 50% of the wild ungulate species reported for Colombia. Over the last...
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Notes on the Solution of Navigation Problems by the Desert Monitor (Varanus grisius, Reptilia, Sauria) in a Natural Environment
AbstractField observations testify that Varanus griseus is able to memorize the place of a single event and to return purposefully to that place...
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First Finding of the Invasive Amphipod Gmelinoides fasciatus in the Basin of Lake Vodlozero (Russia)
AbstractThe presence of the invasive amphipod Gmelinoides fasciatus (Stebbing, 1899) has been established for the first time in the watercourse of...
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Identification of cardiomyopathy-related core genes through human metabolic networks and expression data
BackgroundCardiomyopathy is a complex type of myocardial disease, and its incidence has increased significantly in recent years. Dilated...
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Stabilized mosaic single-cell data integration using unshared features
Currently available single-cell omics technologies capture many unique features with different biological information content. Data integration aims...
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Deterministic, random, or in between? Inferring the randomness level of wildlife movements
BackgroundWhen assessing connectivity, it is crucial to rely on accurate modeling frameworks that consider species movement preferences and patterns....
