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The Bread Wheat Reference Genome Sequence
In 2018, the International Wheat Genome Sequencing Consortium published a reference genome sequence for bread wheat (Triticum aestivum L.). The...
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Reference Genome Sequence of Flax
Flax (Linum usitatissimum L.) is an economically important fibre and oilseed crop with a relatively small genome size, estimated at 370–455 Mb,...
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Improved sequence map** using a complete reference genome and lift-over
Complete, telomere-to-telomere (T2T) genome assemblies promise improved analyses and the discovery of new variants, but many essential genomic...
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Reference-based genome compression using the longest matched substrings with parallelization consideration
BackgroundA large number of researchers have devoted to accelerating the speed of genome sequencing and reducing the cost of genome sequencing for...
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A Reference Genome Assembly and Initial Polymorphism Data for Aotus nancymaae
Owl monkeys (genus Aotus) constitute a remarkable radiation of platyrrhine primates that exhibit many lineage-specific adaptations and evolutionary...
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A new Plasmodium vivax reference genome for South American isolates
BackgroundPlasmodium vivax is the second most important cause of human malaria worldwide, and accounts for the majority of malaria cases in South...
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Genome sequencing and de novo and reference-based genome assemblies of Bos indicus breeds
BackgroundIndian cattle breeds ( Bos indicus ) are known for their remarkable adaptability to hot and humid climates, higher nutritious quality of...
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
Macrocystis pyrifera (giant kelp), is a brown macroalga of great ecological importance as a primary producer and structure-forming foundational...
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ACMGA: a reference-free multiple-genome alignment pipeline for plant species
BackgroundThe short-read whole-genome sequencing (WGS) approach has been widely applied to investigate the genomic variation in the natural...
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Genome assembly of Melilotus officinalis provides a new reference genome for functional genomics
BackgroundSweet yellow clover ( Melilotus officinalis ) is a diploid plant (2n = 16) that is native to Europe. It is an excellent legume forage. It...
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Reference Genome
This chapter describes the relevance of the reference genome for the analysis of Next Generation Sequencing (NGS) data and how the respective...
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Characterization of a strain-specific CD-1 reference genome reveals potential inter- and intra-strain functional variability
BackgroundCD-1 is an outbred mouse stock that is frequently used in toxicology, pharmacology, and fundamental biomedical research. Although inbred...
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Reference Genome of Saffron “The Golden Condiment”
Saffron (Crocus sativus) is often referred to as the golden condiment and is known for its economical and medicinal value. C. sativus is a sterile...
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Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples
BackgroundThe use of a personalized haplotype-specific genome assembly, rather than an unrelated, mosaic genome like GRCh38, as a reference for...
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A wild melon reference genome provides novel insights into the domestication of a key gene responsible for melon fruit acidity
Key messageA wild melon reference genome elucidates the genomic basis of fruit acidity domestication.
AbstractStructural variants (SVs) have been...
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The Wheat Genome
This open access book provides the first comprehensive coverage of the wheat genome sequence since the publication of the draft and reference...
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An improved reference genome and first organelle genomes of Quercus suber
Cork oak ( Quercus suber L.) is an ecologically and economically important evergreen tree species native to the Mediterranean region and widespread in...
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The Flax Genome
The Flax Genome is a comprehensive compilation of most recent studies focused on reference genome, genetic resources and molecular diversity,...
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The Utilization of Reference-Guided Assembly and In Silico Libraries Improves the Draft Genome of Clarias batrachus and Culter alburnus
Long-read sequencing technologies can generate highly contiguous genome assemblies compared to short-read methods. However, their higher cost often...
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Genome Editing
The genome editing prospect has altered molecular biology research and presented diverse options for detecting, imaging, manipulating, and annotating...