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Adding random points to sampling grids to improve the quality of soil fertility maps
The definition of the distance between sampling grid points directly impacts the development of fertility maps because it affects the spatial...
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High-resolution Nanopore methylome-maps reveal random hyper-methylation at CpG-poor regions as driver of chemoresistance in leukemias
Aberrant DNA methylation at CpG dinucleotides is a cancer hallmark that is associated with the emergence of resistance to anti cancer treatment,...
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All-atom RNA structure determination from cryo-EM maps
Many methods exist for determining protein structures from cryogenic electron microscopy maps, but this remains challenging for RNA structures. Here...
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The structure of genotype-phenotype maps makes fitness landscapes navigable
Fitness landscapes are often described in terms of ‘peaks’ and ‘valleys’, indicating an intuitive low-dimensional landscape of the kind encountered...
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Floral resource maps: a tool to explain flower-visiting insect abundance at multiple spatial scales
ContextFlower-visiting insects depend on floral resource availability from both cultivated and semi-natural habitats in agricultural landscapes....
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neuromaps: structural and functional interpretation of brain maps
Imaging technologies are increasingly used to generate high-resolution reference maps of brain structure and function. Comparing experimentally...
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Forming cognitive maps for abstract spaces: the roles of the human hippocampus and orbitofrontal cortex
How does the human brain construct cognitive maps for decision-making and inference? Here, we conduct an fMRI study on a navigation task in...
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GIS-FA: an approach to integrating thematic maps, factor-analytic, and enviroty** for cultivar targeting
Key messageWe propose an “enviromics” prediction model for recommending cultivars based on thematic maps aimed at decision-makers.
Abstract ...
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Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
Recent deep learning models that predict the Hi-C contact map from DNA sequence achieve promising accuracy but cannot generalize to new cell types...
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Multi-layered maps of neuropil with segmentation-guided contrastive learning
Maps of the nervous system that identify individual cells along with their type, subcellular components and connectivity have the potential to...
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Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction
The problem of missing heritability requires the consideration of genetic interactions among different loci, called epistasis. Current GWAS...
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SeSAM: software for automatic construction of order-robust linkage maps
BackgroundGenoty** and sequencing technologies produce increasingly large numbers of genetic markers with potentially high rates of missing or...
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Identification of plant vacuole proteins by using graph neural network and contact maps
Plant vacuoles are essential organelles in the growth and development of plants, and accurate identification of their proteins is crucial for...
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Neural representations of cryo-EM maps and a graph-based interpretation
BackgroundAdvances in imagery at atomic and near-atomic resolution, such as cryogenic electron microscopy (cryo-EM), have led to an influx of high...
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Residue-wise local quality estimation for protein models from cryo-EM maps
An increasing number of protein structures are being determined by cryogenic electron microscopy (cryo-EM). Although the resolution of determined...
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BacterAI maps microbial metabolism without prior knowledge
Training artificial intelligence (AI) systems to perform autonomous experiments would vastly increase the throughput of microbiology; however, few...
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On exploring bivariate and trivariate maps as visualization tools for spatial associations in digital soil map**: A focus on soil properties
The benefits of digital soil maps cannot be overemphasised. For many years, researchers have mapped different soil classes, properties and processes...
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HiCmapTools: a tool to access HiC contact maps
BackgroundWith the development of HiC technology, more and more HiC sequencing data have been produced. Although there are dozens of packages that...
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High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
BackgroundThe growing availability of genomic resources in radiata pine paves the way for significant advances in fundamental and applied genomic...
