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Optimized Deep Learning for Potato Blight Detection Using the Waterwheel Plant Algorithm and Sine Cosine Algorithm
Potato blight, sometimes referred to as late blight, is a deadly disease that affects Solanaceae plants, including potato. The oomycete Phytophthora...
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Moving average and standard deviation thresholding (MAST): a novel algorithm for accurate R-wave detection in the murine electrocardiogram
Advances in implantable radio-telemetry or diverse biologging devices capable of acquiring high-resolution ambulatory electrocardiogram (ECG) or...
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Dynamic SARS-CoV-2 emergence algorithm for rationally-designed logical next-generation vaccines
SARS-CoV-2 worldwide spread and evolution has resulted in variants containing mutations resulting in immune evasive epitopes that decrease vaccine...
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A functional gene module identification algorithm in gene expression data based on genetic algorithm and gene ontology
Since genes do not function individually, the gene module is considered an important tool for interpreting gene expression profiles. In order to...
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An Allee-based distributed algorithm for microbial whole-cell sensors
Reliable detection of substances present at potentially low concentrations is a problem common to many biomedical applications. Complementary to...
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MSXFGP: combining improved sparrow search algorithm with XGBoost for enhanced genomic prediction
BackgroundWith the significant reduction in the cost of high-throughput sequencing technology, genomic selection technology has been rapidly...
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Response Surface Modeling and Multi-objective Genetic Algorithm Optimization of Polyphenol/terpineol Yield from Luffa cylindrica Oil
Using the Response surface methodology (RSM) and multi-objective genetic algorithm (MOGA) techniques, this study investigated the optimal extraction...
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The MultiFurcating Neighbor-Joining Algorithm for Reconstructing Polytomic Phylogenetic Trees
Results from phylogenetic analyses that study the evolution of species according to their biological characteristics are frequently structured as...
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Comprehensive Guideline for Microbiome Analysis Using R
The need for a comprehensive consolidated guide for R packages and tools that are used in microbiome data analysis is significant; thus, we aim to...
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Wood defect detection based on the CWB-YOLOv8 algorithm
As an important renewable resource, wood is widely used in various industries. When addressing wood defects that limit the amount of wood used during...
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Scellpam: an R package/C++ library to perform parallel partitioning around medoids on scRNAseq data sets
BackgroundPartitioning around medoids (PAM) is one of the most widely used and successful clustering method in many fields. One of its key...
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Maintenance of R-loop structures by phosphorylated hTERT preserves genome integrity
As aberrant accumulation of RNA–DNA hybrids (R-loops) causes DNA damage and genome instability, cells express regulators of R-loop structures. Here...
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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Non-negative matrix factorization (NMF) is an unsupervised learning method well suited to high-throughput biology. However, inferring biological...
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A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm
Bayesian phylogenetics is a computationally challenging inferential problem. Classical methods are based on random-walk Markov chain Monte Carlo...
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ShinyCore: An R/Shiny program for establishing core collection based on single nucleotide polymorphism data
BackgroundManaging and investigating all available genetic resources are challenging. As an alternative, breeders and researchers use core...
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CAOS-R: Character-Based Barcoding
CAOS-Barcoding is a culmination of traditional taxonomy and modern DNA barcoding. CAOS identifies taxa by diagnostic characters as is done in...
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gcplyr: an R package for microbial growth curve data analysis
BackgroundCharacterization of microbial growth is of both fundamental and applied interest. Modern platforms can automate collection of...
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kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R
BackgroundApproximating the recent phylogeny of N phased haplotypes at a set of variants along the genome is a core problem in modern population...
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Real-time cucurbit fruit detection in greenhouse using improved YOLO series algorithm
The real-time cucurbit fruit detection algorithm in complex environment of greenhouse is associated with challenges. Leaves occlusion, overlap**...
