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Phylogenetic Analysis of Bacterial Pathogen Genomes
The development of high-throughput sequencing technology has led to a significant reduction in the time and cost of sequencing whole genomes of...
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Introduction to Phylogenetic Analysis of Molecular Sequence Data
Phylogeny is a model of the relationships between organisms, genes, proteins, or other structures based on common ancestry. It is also used for...
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Deep-time phylogenetic inference by paleoproteomic analysis of dental enamel
In temperate and subtropical regions, ancient proteins are reported to survive up to about 2 million years, far beyond the known limits of ancient...
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PhyloNext: a pipeline for phylogenetic diversity analysis of GBIF-mediated data
BackgroundUnderstanding biodiversity patterns is a central topic in biogeography and ecology, and it is essential for conservation planning and...
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Phylogenetic analysis of Lamiaceae based on transcriptome data
The Lamiaceae family is included in the angiosperms and comprises over 7000 species, many of which are of considerable ecological, economic, and...
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Assigning Taxonomy, Building Phylogenetic Tree
Taxonomic classification of the representative sequences and clustering of OTUs (Operational Taxonomic Units) are two core steps in bioinformatic...
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Taxonomy and phylogenetic diversity among the yeasts
Yeasts are among the economically and scientifically most important eukaryotic microorganisms known. At present, there are 1,500 recognized species,...
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Investigating pigeon circovirus infection in a pigeon farm: molecular detection, phylogenetic analysis and complete genome analysis
BackgroundPigeon circovirus infections in pigeons ( Columba livia domestica ) have been reported worldwide. Pigeons should be PiCV-free when utilized...
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Comparative chloroplast genomics and phylogenetic analysis of Oreomecon nudicaulis (Papaveraceae)
Oreomecon nudicaulis , commonly known as mountain poppy, is a significant perennial herb. In 2022, the species O. nudicaulis , which was previously...
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Codon usage bias and phylogenetic analysis of chloroplast genome in 36 gracilariaceae species
Gracilariaceae is a group of marine large red algae and main source of agar with important economic and ecological value. The codon usage patterns of...
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Chloroplast Genome Sequence and Phylogenetic Analysis of Medicinal Plant Pinellia ternata
AbstractPinellia ternata, as one of the traditional Chinese medicines, has a significant effect on eliminating dampness, stop** vomiting and calm...
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New taxonomic framework for Arthrodermataceae: a comprehensive analysis based on their phylogenetic reconstruction, divergence time estimation, phylogenetic split network, and phylogeography
The Arthrodermataceae, or dermatophytes, are a major family in the Onygenales and important from a public health safety perspective. Here, based on...
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Application of Bioinformatic Tools for Phylogenetic Analysis
The term phylogeny refers to the progression or historical development of a plant, animal, or microbial species, the tracing of such similar group...
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Comparative and phylogenetic analysis of the complete chloroplast genomes of ten Pittosporum species from East Asia
Pittosporum (Pittosporaceae) is famous as the ornamental and medical values, which is distributed tropical and subtropical regions of Eastern...
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Phylogenetic Analysis
In this chapter, the authors attempt to understand the underlying phylogeny principle and how researchers implement diverse methods to discover the...
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Complete genome sequence and phylogenetic analysis of feline panleukopenia virus from India
Parvoviruses are ubiquitous pathogens that cause fatal disease in cats. Feline panleukopenia virus (FPV) is a primitive virus reported first and...
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Phylogenetic analysis of Eimeria tenella isolates from chicken of sub-tropical mountains of Meghalaya, India
BackgroundCoccidiosis is the most common and pathogenic intestinal disease caused by different species of Eimeria is chicken. In this study, we...
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Phylogenetic Analysis and Frequency Estimation of HTLV-1 Virus in Hemophilic Patients Refer to Iranian Comprehensive Hemophilia Care Center (ICHCC)
AbstractHuman T-lymphotropic virus type 1 (HTLV-1) is associated with the development of malignant diseases, particularly adult T-cell...
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Detection and phylogenetic analysis of epidemic carp edema virus in Bei**g, China (2021–2022)
Carp edema virus (CEV) is the causative agent of carp edema virus disease (CEVD), also known as koi sleepy disease (KSD), which is a highly...
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Phylogenetic analysis of papillomaviruses in dogs from southern Brazil: molecular epidemiology and investigation of mixed infections and spillover events
Papillomaviruses (PVs) have been identified in several animal species, including dogs (canine papillomaviruses, CPVs) and cattle (bovine...
