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  1. DNA-targeting short Argonautes complex with effector proteins for collateral nuclease activity and bacterial population immunity

    Two prokaryotic defence systems, prokaryotic Argonautes (pAgos) and CRISPR–Cas, detect and cleave invader nucleic acids using complementary guides...

    Maria Prostova, Anna Kanevskaya, ... Andrey Kulbachinskiy in Nature Microbiology
    Article 15 April 2024
  2. Engineered Cas12a-Plus nuclease enables gene editing with enhanced activity and specificity

    Background

    The CRISPR-Cas12a (formerly Cpf1) system is a versatile gene-editing tool with properties distinct from the broadly used Cas9 system....

    Hongxin Huang, Guanjie Huang, ... Zhili Rong in BMC Biology
    Article Open access 25 April 2022
  3. Trans-nuclease activity of Cas9 activated by DNA or RNA target binding

    Type V and type VI CRISPR–Cas systems have been shown to cleave nonspecific single-stranded DNA (ssDNA) or single-stranded RNA (ssRNA) in trans , but...

    Jiyun Chen, Ying Chen, ... Liang Liu in Nature Biotechnology
    Article 29 May 2024
  4. Monitoring Nuclease Activity by X-Ray Scattering Interferometry Using Gold Nanoparticle-Conjugated DNA

    The biologically critical, exquisite specificity and efficiency of nucleases, such as those acting in DNA repair and replication, often emerge in the...
    Daniel J. Rosenberg, Aleem Syed, ... Greg L. Hura in DNA Damage Responses
    Protocol 2022
  5. Defining genome-wide CRISPR–Cas genome-editing nuclease activity with GUIDE-seq

    Genome-wide unbiased identification of double-stranded breaks enabled by sequencing (GUIDE-seq) is a sensitive, unbiased, genome-wide method for...

    Nikolay L. Malinin, GaHyun Lee, ... Shengdar Q. Tsai in Nature Protocols
    Article 12 November 2021
  6. MIF promotes neurodegeneration and cell death via its nuclease activity following traumatic brain injury

    Traumatic brain injury (TBI), often induced by sports, car accidents, falls, or other daily occurrences, is a primary non-genetically related risk...

    Zhi Ruan, Qing Lu, ... Yingfei Wang in Cellular and Molecular Life Sciences
    Article 18 December 2021
  7. Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex

    Coupling distinct enzymatic effectors emerges as an efficient strategy for defense against phage infection in bacterial immune responses, such as the...

    Qiyin An, Yong Wang, ... Zengqin Deng in Cell Research
    Article Open access 04 June 2024
  8. Structural and functional analyses of Burkholderia pseudomallei BPSL1038 reveal a Cas-2/VapD nuclease sub-family

    Burkholderia pseudomallei is a highly versatile pathogen with ~25% of its genome annotated to encode hypothetical proteins. One such hypothetical...

    Sofiyah Shaibullah, Nurshahirah Shuhaimi, ... Chyan Leong Ng in Communications Biology
    Article Open access 08 September 2023
  9. Efficient elimination of MELAS-associated m.3243G mutant mitochondrial DNA by an engineered mitoARCUS nuclease

    Nuclease-mediated editing of heteroplasmic mitochondrial DNA (mtDNA) seeks to preferentially cleave and eliminate mutant mtDNA, leaving wild-type...

    Wendy K. Shoop, Janel Lape, ... Carlos T. Moraes in Nature Metabolism
    Article Open access 30 November 2023
  10. APEX1 Nuclease and Redox Functions are Both Essential for Adult Mouse Hematopoietic Stem and Progenitor Cells

    Self-renewal and differentiation of hematopoietic stem and progenitor cells (HSPCs) are carefully controlled by extrinsic and intrinsic factors, to...

    Samantha Zaunz, Jonathan De Smedt, ... Catherine Verfaillie in Stem Cell Reviews and Reports
    Article Open access 02 June 2023
  11. Application of DETECTR for Selective Detection of Bacterial Phytopathogen Dickeya solani Using Recombinant CRISPR-Nuclease Cas12a Obtained by Single-Stage Chromatographic Purification

    Abstract

    The work demonstrates that recombinant CRISPR-nuclease Cas12a, purified after heterologous expression with a simplified method using...

    L. K. Kurbatov, S. P. Radko, ... A. V. Lisitsa in Applied Biochemistry and Microbiology
    Article 01 February 2024
  12. Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease

    This study presents a novel approach for map** global chromatin interactions using S1 nuclease, a sequence-agnostic enzyme. We develop and outline...

    Gridina Maria, Popov Andrey, ... Fishman Veniamin in Epigenetics & Chromatin
    Article Open access 11 December 2023
  13. Construction of a Z-DNA-Specific Recombinant Nuclease Zαα-FOK for Conformation Studies

    Development of FokI-based engineered nucleases has been a platform technology that enables creation of novel sequence-specific nucleases as well as...
    Seul Ki Lee, Yang-Gyun Kim in Z-DNA
    Protocol 2023
  14. Transmembrane nuclease NUMEN/ENDOD1 regulates DNA repair pathway choice at the nuclear periphery

    Proper repair of DNA damage lesions is essential to maintaining genome integrity and preventing the development of human diseases, including cancer....

    Bohong Chen, Tianyu Ge, ... Zhou Songyang in Nature Cell Biology
    Article 15 June 2023
  15. Effect of Zn2+ Ions on Acid Nuclease Activity in Freshwater Mollusks

    Abstract

    The effect of increased concentrations of Zn 2+ ions on the activity of the complex of acid deoxyribonucleases (DNases) and ribonucleases...

    T. S. Droganova, L. V. Polikarpova, ... N. V. Vasiliev in Biology Bulletin
    Article 01 February 2022
  16. Transgenic Lines of Human Induced Pluripotent Stem Cells ICGi022-A-6 and ICGi022-A-7 with Doxycycline-Inducible Variants of Programmable Nuclease AsCas12a

    Abstract

    Genome editing in human pluripotent stem cells using programmable nucleases makes it possible to create models of hereditary pathologies...

    S. V. Pavlova, K. R. Valetdinova, ... S. P. Medvedev in Russian Journal of Developmental Biology
    Article 01 December 2023
  17. A shape-shifting nuclease unravels structured RNA

    RNA turnover pathways ensure appropriate gene expression levels by eliminating unwanted transcripts. Dis3-like 2 (Dis3L2) is a 3′–5′ exoribonuclease...

    Katarina Meze, Armend Axhemi, ... Leemor Joshua-Tor in Nature Structural & Molecular Biology
    Article Open access 23 February 2023
  18. Targeted Nuclease Approaches for Map** Native R-Loops

    R-loops are three-stranded, DNA:RNA hybrid-containing structures that form naturally throughout the genome as a consequence of transcription....
    Phillip Wulfridge, Qingqing Yan, Kavitha Sarma in R-Loops
    Protocol 2022
  19. Improvement of duplex-specific nuclease salt tolerance by fusing DNA-binding domain of DNase from an extremely halotolerant bacterium Thioalkalivibrio sp. K90mix

    Salt tolerance is an important property of duplex-specific nuclease (DSN). DSN with high salt tolerance can be more widely used in genetic...

    Wenhao Hu, ** Wang, ... Henghao Xu in Extremophiles
    Article 13 May 2023
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