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Yak genome database: a multi-omics analysis platform
BackgroundThe yak ( Bos grunniens ) is a large ruminant species that lives in high-altitude regions and exhibits excellent adaptation to the plateau...
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The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients
Contemporary analyses focused on a limited number of clinical and molecular biomarkers have been unable to accurately predict clinical outcomes in...
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Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP
BackgroundWith the continuous advances in third-generation sequencing technology and the increasing affordability of next-generation sequencing...
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High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions
Key messageTranscriptomics and proteomics information collected on a platform can predict additive and non-additive effects for platform traits and...
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A multi-organoid platform identifies CIART as a key factor for SARS-CoV-2 infection
COVID-19 is a systemic disease involving multiple organs. We previously established a platform to derive organoids and cells from human pluripotent...
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The pear genomics database (PGDB): a comprehensive multi-omics research platform for Pyrus spp.
BackgroundPears are among the most important temperate fruit trees in the world, with significant research efforts increasing over the last years....
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Blib is a multi-module simulation platform for genetics studies and intelligent breeding
Simulation is an efficient approach for the investigation of theoretical and applied issues in population and quantitative genetics, and animal and...
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Quartet protein reference materials and datasets for multi-platform assessment of label-free proteomics
BackgroundQuantitative proteomics is an indispensable tool in life science research. However, there is a lack of reference materials for evaluating...
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GraphOmics: an interactive platform to explore and integrate multi-omics data
BackgroundAn increasing number of studies now produce multiple omics measurements that require using sophisticated computational methods for...
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Multi-Temporal and Multi-Platform Satellite-Based Map** of White Sand Ecosystems
In the past few decades, attempts have been made to map and monitor disturbances affecting white-sand ecosystems in the Amazonian lowlands. Status...
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PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management
IntroductionAccuracy of feature annotation and metabolite identification in biological samples is a key element in metabolomics research. However,...
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Stakeholders’ engagement platform to identify sustainable pathways for the development of multi-functional agroforestry in Guadeloupe, French West Indies
Social innovation is critical in sha** human-forest relationships and how farmers and scientists engage with each other to design sustainability...
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pyHiM: a new open-source, multi-platform software package for spatial genomics based on multiplexed DNA-FISH imaging
Genome-wide ensemble sequencing methods improved our understanding of chromatin organization in eukaryotes but lack the ability to capture...
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I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
Most proteins in cells are composed of multiple folding units (or domains) to perform complex functions in a cooperative manner. Relative to the...
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Multi-Stakeholder Platform for Coastal Ecosystem Restoration and Sustainable Livelihood in Sanniang Bay in Guangxi, South China
This case study aims to explore community-based marine biodiversity conservation that balances environmental protection and development in fishing...
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Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation
BackgroundHot spring biofilms provide a window into the survival strategies of microbial communities in extreme environments and offer potential for...
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MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks
BackgroundMass spectrometry (MS) has become a promising analytical technique to acquire proteomics information for the characterization of biological...
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Direct prediction of site-specific lime requirement of arable fields using the base neutralizing capacity and a multi-sensor platform for on-the-go soil map**
Liming agricultural fields is necessary for counteracting soil acidity and is one of the oldest operations in soil fertility management. However, the...
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Comparative metabolomics analysis reveals high-altitude adaptations in a toad-headed viviparous lizard, Phrynocephalus vlangalii
Extreme environmental conditions at high altitude, such as hypobaric hypoxia, low temperature, and strong UV radiation, pose a great challenge to the...
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A multi-dimensional, time-lapse, high content screening platform applied to schistosomiasis drug discovery
Approximately 10% of the world’s population is at risk of schistosomiasis, a disease of poverty caused by the Schistosoma parasite. To facilitate...
