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Showing 1-20 of 1,454 results
  1. DeepARV: ensemble deep learning to predict drug-drug interaction of clinical relevance with antiretroviral therapy

    Drug-drug interaction (DDI) may result in clinical toxicity or treatment failure of antiretroviral therapy (ARV) or comedications. Despite the high...

    Thao Pham, Mohamed Ghafoor, ... Marco Siccardi in npj Systems Biology and Applications
    Article Open access 06 May 2024
  2. Comparison of cancer subtype identification methods combined with feature selection methods in omics data analysis

    Background

    Cancer subtype identification is important for the early diagnosis of cancer and the provision of adequate treatment. Prior to identifying...

    JiYoon Park, Jae Won Lee, Mira Park in BioData Mining
    Article Open access 07 July 2023
  3. iIL13Pred: improved prediction of IL-13 inducing peptides using popular machine learning classifiers

    Background

    Inflammatory mediators play havoc in several diseases including the novel Coronavirus disease 2019 (COVID-19) and generally correlate with...

    Pooja Arora, Neha Periwal, ... Baljeet Kaur in BMC Bioinformatics
    Article Open access 11 April 2023
  4. Monitoring leaf nitrogen content in rice based on information fusion of multi-sensor imagery from UAV

    Timely and accurately monitoring leaf nitrogen content (LNC) is essential for evaluating crop nutrition status. Currently, Unmanned Aerial Vehicles...

    Sizhe Xu, **ngang Xu, ... Binbin Wang in Precision Agriculture
    Article Open access 25 July 2023
  5. Prediction and Analysis of Key Genes in Prostate Cancer via MRMR Enhanced Similarity Preserving Criteria and Pathway Enrichment Methods

    Informative gene discovery has grown in interest in the field of biomedical research with the advent of high throughput technologies. The filter...
    Robert Benjamin Eshun, Hugette Naa Ayele Aryee, ... A.  K.  M. Kamrul Islam in Machine Learning Methods for Multi-Omics Data Integration
    Chapter 2024
  6. A novel and innovative cancer classification framework through a consecutive utilization of hybrid feature selection

    Cancer prediction in the early stage is a topic of major interest in medicine since it allows accurate and efficient actions for successful medical...

    Rajul Mahto, Saboor Uddin Ahmed, ... Mohd Asif Shah in BMC Bioinformatics
    Article Open access 15 December 2023
  7. Enhancing mass spectrometry imaging accessibility using convolutional autoencoders for deriving hypoxia-associated peptides from tumors

    Mass spectrometry imaging (MSI) allows to study cancer’s intratumoral heterogeneity through spatially-resolved peptides, metabolites and lipids. Yet,...

    Verena Bitto, Pia Hönscheid, ... Benedikt Brors in npj Systems Biology and Applications
    Article Open access 27 May 2024
  8. Biomarker discovery with quantum neural networks: a case-study in CTLA4-activation pathways

    Background

    Biomarker discovery is a challenging task due to the massive search space. Quantum computing and quantum Artificial Intelligence (quantum...

    Phuong-Nam Nguyen in BMC Bioinformatics
    Article Open access 12 April 2024
  9. Comparison of five supervised feature selection algorithms leading to top features and gene signatures from multi-omics data in cancer

    Background

    As many complex omics data have been generated during the last two decades, dimensionality reduction problem has been a challenging issue...

    Tapas Bhadra, Saurav Mallik, ... Zhongming Zhao in BMC Bioinformatics
    Article Open access 28 April 2022
  10. Wood anatomical spectrum of co-occurring species in early and late-successional tropical dry forest communities

    Key message

    Analysis of wood anatomical traits revealed that drought tolerance predominates in early-successional communities, and vessel variability...

    Eunice Romero, Teresa Terrazas, ... Jorge A. Meave in Trees
    Article Open access 01 September 2023
  11. Harmonizing heterogeneous transcriptomics datasets for machine learning-based analysis to identify spaceflown murine liver-specific changes

    NASA has employed high-throughput molecular assays to identify sub-cellular changes impacting human physiology during spaceflight. Machine learning...

    Hari Ilangovan, Prachi Kothiyal, ... Parastou Eslami in npj Microgravity
    Article Open access 11 June 2024
  12. Microbial and enzymatic changes in cigar tobacco leaves during air-curing and fermentation

    Abstract

    Metabolic enzyme activity and microbial composition of the air-curing and fermentation processes determine the quality of cigar tobacco...

    Qing Zhang, Guanghui Kong, ... Tao Liu in Applied Microbiology and Biotechnology
    Article Open access 17 July 2023
  13. Coastal freshwater stream fish fauna from a threatened estuarine lagoon complex in northeastern Brazil

    Freshwater ecosystems play a vital role in sustaining human populations; however, these environments are increasingly subject to human interference,...

    Robert Germano Alves da Silva, María Angélica Pérez-Mayorga, Renato Mei Romero in Environmental Biology of Fishes
    Article 23 December 2023
  14. Predicting gene phenotype by multi-label multi-class model based on essential functional features

    Phenotype is one of the most significant concepts in genetics, which is used to describe all the characteristics of a research object that can be...

    Lei Chen, Zhandong Li, ... Yu-Dong Cai in Molecular Genetics and Genomics
    Article 29 April 2021
  15. Patterns and driving factors of functional traits of desert species with different elevational distributions in the Tibetan Plateau and adjacent areas

    Variations in functional traits serve as measures of plants’ ability to adapt to environment. Exploring the patterns of functional traits of desert...

    Ya Hu, **angyun Li, ... **aoan Zuo in BMC Plant Biology
    Article Open access 09 May 2024
  16. Avian functional diversity across the neotropics: current knowledge and perspectives

    The value of birds as indicators of environmental change is of greater relevance given the current rapid habitat loss and transformation rates. This...

    Marisela Martínez-Ruiz, Rafael Rueda-Hernández in Ornithology Research
    Article 21 December 2023
  17. Maximum air temperature controlled by landscape topography affects plant species composition in temperate forests

    Context

    Forest microclimates differ from regional macroclimates because forest canopies affect energy fluxes near the ground. However, little is known...

    Martin Macek, Martin Kopecký, Jan Wild in Landscape Ecology
    Article 14 September 2019
  18. Tropical headwater streams and the role of non-native species on fish assemblage’s diversity

    Non-native species cause several impacts on freshwater biodiversity, but studies focusing on the Neotropical stream’s biota are still incipient. We...

    Bruno R. B. Santos, Fabrício B. Teresa, ... Rodrigo A. Carvalho in Biological Invasions
    Article 27 May 2023
  19. Unravelling the ozone toxicity in Zea mays L. (C4 plant) under the elevated level of CO2 fertilization

    Enhanced anthropogenic activities affect agricultural production in many ways. An integrated study assessing the combined impact of increased...

    Aditya Abha Singh, Annesha Ghosh, ... S. B. Agrawal in Tropical Ecology
    Article 04 May 2023
  20. Soil properties variation in a small-scale altitudinal gradient of an evergreen foothills forest, Ecuadorian Amazon region

    The aim of this study was to evaluate variation in the soil physical and chemical properties in a small-scale elevation gradient at 601–1000 m above...

    Carlos Bravo-Medina, Bolier Torres-Navarrete, ... Daniel Paguay-Sayay in European Journal of Forest Research
    Article 10 July 2023
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