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Statistically learning the functional landscape of microbial communities
Microbial consortia exhibit complex functional properties in contexts ranging from soils to bioreactors to human hosts. Understanding how community...
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Functional convergence in slow-growing microbial communities arises from thermodynamic constraints
The dynamics of microbial communities is complex, determined by competition for metabolic substrates and cross-feeding of byproducts. Species in the...
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Functional conservation of microbial communities determines composition predictability in anaerobic digestion
A major challenge in managing and engineering microbial communities is determining whether and how microbial community responses to environmental...
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Annotation-free discovery of functional groups in microbial communities
Recent studies have shown that microbial communities are composed of groups of functionally cohesive taxa whose abundance is more stable and...
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Reveal the microbial communities and functional prediction during the fermentation of Fen-flavor Baijiu via metagenome combining amplicon sequencing
PurposeMicrobial resources are abundant in fermented grains of the Chinese Fen-flavor Baijiu , which is closely related to the quality of Baijiu . The...
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Metabolic Functional Profiles of Microbial Communities in Methane Production Systems Treating Winery Wastewater
This study investigated the impact of process configuration and conditions on microbial communities and metabolic pathways in the anaerobic digestion...
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Deciphering Microbial Adaptation in the Rhizosphere: Insights into Niche Preference, Functional Profiles, and Cross-Kingdom Co-occurrences
Rhizosphere microbial communities are to be as critical factors for plant growth and vitality, and their adaptive differentiation strategies have...
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Soil microbial richness and community composition are primarily mediated by functional trait diversity of fine roots in subtropical forests
AimsAlthough plant–microbial interactions are essential to sustain terrestrial ecosystem functions, root–microbial interactions remain poorly...
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Impact of planting Phallus rubrovolvatus on physicochemical and microbial properties and functional groups of soil
PurposeSoil microbial communities are critically important to agricultural ecosystems. The present study aimed to evaluate the changes in soil...
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Microbial community structure and exploration of bioremediation enzymes: functional metagenomics insight into Arabian Sea sediments
Deep-sea sediments provide important information on oceanic biogeochemical processes mediated by the microbiome and their functional roles which...
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Effects of Continuous Straw Returning on Soil Functional Microorganisms and Microbial Communities
This study examined the changes in soil enzymatic activity, microbial carbon source metabolic diversity, and straw decomposition rates in paddy...
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Diversity and functional prediction of fungal communities in different segments of mongolian horse gastrointestinal tracts
BackgroundAnaerobic fungi are effective fibre-degrading microorganisms in the digestive tract of horses. However, our understanding of their...
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Unveiling the microbial diversity and functional dynamics of Shiv Kund, Sohna hot spring, India through a shotgun metagenomics approach
In this research, we examined the microbial diversity in Sohna hot spring, Haryana, India using shotgun metagenome sequencing based on the Illumina...
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A novel bi-directional heterogeneous network selection method for disease and microbial association prediction
Microorganisms in the human body have a great impact on human health. Therefore, mastering the potential relationship between microorganisms and...
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Functional Redundancy in Bat Microbial Assemblage in the Presence of the White Nose Pathogen
Understanding how host-associated microbial assemblages respond to pathogen invasion has implications for host health. Until recently, most...
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Association between oral microbial dysbiosis and poor functional outcomes in stroke-associated pneumonia patients
BackgroundDespite advances in our understanding of the critical role of the microbiota in stroke patients, the oral microbiome has rarely been...
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Soil carbon storage and accessibility drive microbial carbon use efficiency by regulating microbial diversity and key taxa in intercrop** ecosystems
Intercrop** is a powerful practice to alter the allocation of photosynthetic carbon (C) to belowground ecosystems via promotion of diversified...
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Compositional and functional diversities of core microbial communities in wild and artificial Ophiocordyceps sinensis
Ophiocordyceps sinensis is an entomogenous fungus, and its wildlife resource is very insufficient, as it is widely traded as a natural health...
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Use Cases and Future Aspects of Intelligent Techniques in Microbial Data Analysis
Microbes, including bacteria, archaea, fungi, and viruses, are fundamental to our ecosystems, health, and industries. Microbial data analysis has... -
Modeling Microbial Community Networks: Methods and Tools for Studying Microbial Interactions
Microbial interactions function as a fundamental unit in complex ecosystems. By characterizing the type of interaction (positive, negative, neutral)...