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  1. JCBIE: a joint continual learning neural network for biomedical information extraction

    Extracting knowledge from heterogeneous data sources is fundamental for the construction of structured biomedical knowledge graphs (BKGs), where...

    Kai He, Rui Mao, ... Chen Li in BMC Bioinformatics
    Article Open access 19 December 2022
  2. Digital surveillance in Latin American diseases outbreaks: information extraction from a novel Spanish corpus

    Background

    In order to detect threats to public health and to be well-prepared for endemic and pandemic illness outbreaks, countries usually rely on...

    Antonella Dellanzo, Viviana Cotik, ... José Ochoa-Luna in BMC Bioinformatics
    Article Open access 23 December 2022
  3. Extraction of Quantitative Information from Hyperspectral Reflectance Images for Noninvasive Plant Phenoty**

    Abstract

    Assessment of plant traits (phenoty**) is central to modern advanced techniques of plant sciences and accelerated breeding of crop plants,...

    A. E. Solovchenko, B. M. Shurygin, ... A. S. Krylov in Russian Journal of Plant Physiology
    Article 01 December 2022
  4. IMSE: interaction information attention and molecular structure based drug drug interaction extraction

    Background

    Extraction of drug drug interactions from biomedical literature and other textual data is an important component to monitor drug-safety and...

    Biao Duan, **g Peng, Yi Zhang in BMC Bioinformatics
    Article Open access 14 August 2022
  5. A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures

    Background

    The accelerating pace of biomedical publication has made it impractical to manually, systematically identify papers containing specific...

    Adam J. H. Newton, David Chartash, ... Robert A. McDougal in BMC Bioinformatics
    Article Open access 20 July 2023
  6. Sampling and Extraction of Plant Parasitic Nematodes

    The study of nematodes requires availability of nematode specimens and their population densities in plants and soil. This can be achieved using...
    Nicola Greco, Renato Crozzoli in Plant-Nematode Interactions
    Protocol 2024
  7. Identification of Mycoviruses by dsRNA Extraction

    Mycoviruses exist in all major groups of fungi. With the continuous development of science and technology, the methods of studying viruses are...
    Yanfei Wang, Clement Nzabanita, Lihua Guo in Double-Stranded RNA
    Protocol 2024
  8. Extraction of Soluble Proteins from Leaves

    Protein biochemistry can provide valuable answers to better understand plant performance and responses to the surrounding environment. In this...
    Elizabete Carmo-Silva, Rhiannon Page, ... Douglas J. Orr in Photosynthesis
    Protocol 2024
  9. SubMDTA: drug target affinity prediction based on substructure extraction and multi-scale features

    Background

    Drug–target affinity (DTA) prediction is a critical step in the field of drug discovery. In recent years, deep learning-based methods have...

    Shourun Pan, Leiming **a, ... Zhen Li in BMC Bioinformatics
    Article Open access 07 September 2023
  10. Development of metabolome extraction strategy for metabolite profiling of skin tissue

    Introduction

    Changes in skin phenotypic characteristics are based on skin tissue. The study of the metabolic changes in skin tissue can help...

    Ting Bu, Sooah Kim in Metabolomics
    Article 29 April 2024
  11. CHL-DTI: A Novel High–Low Order Information Convergence Framework for Effective Drug–Target Interaction Prediction

    Recognizing drug–target interactions (DTI) stands as a pivotal element in the expansive field of drug discovery. Traditional biological wet...

    Shudong Wang, Yingye Liu, ... Shanchen Pang in Interdisciplinary Sciences: Computational Life Sciences
    Article 14 March 2024
  12. Phage DNA Extraction, Genome Assembly, and Genome Closure

    Bacteriophages, or more simply phages, are currently experiencing a renaissance in life science research for their roles in natural microbial...
    Justin Boeckman, Mei Liu, ... Jason Gill in Bacteriophages
    Protocol 2024
  13. Extraction, Isolation, and Characterization Techniques of Structural Proteins

    This chapter comprehensively explores the extraction methods, isolation techniques, and characterization approaches for structural proteins. It...
    Chapter 2024
  14. A biomedical event extraction method based on fine-grained and attention mechanism

    Background

    Biomedical event extraction is a fundamental task in biomedical text mining, which provides inspiration for medicine research and disease...

    **nyu He, ** Tai, ... Yonggong Ren in BMC Bioinformatics
    Article Open access 29 July 2022
  15. Extraction and Purification of Outer Membrane Vesicles and Their Associated RNAs

    Outer membrane vesicles (OMVs), produced by Gram negative-bacteria and sRNAs, are key players in cell-to-cell communication and interactions of...
    Anaïs Blache, Wafa Achouak in Bacterial Regulatory RNA
    Protocol 2024
  16. Extraction optimisation to measure viral abundance in red soils

    Viruses are extremely abundant in soils and have various important ecological implications therein. The quantification and identification of soil...

    Sengxiang Yu, Shuang Wang, ... Tida Ge in Biology and Fertility of Soils
    Article 30 August 2023
  17. Extracting illuminated vegetation, shadowed vegetation and background for finer fractional vegetation cover with polarization information and a convolutional network

    Shadows are inevitable in vegetated remote sensing scenes due to variations in viewing and solar geometries, resulting in illuminated vegetation,...

    Hongru Bi, Wei Chen, Yi Yang in Precision Agriculture
    Article 13 December 2023
  18. SCA: recovering single-cell heterogeneity through information-based dimensionality reduction

    Dimensionality reduction summarizes the complex transcriptomic landscape of single-cell datasets for downstream analyses. Current approaches favor...

    Benjamin DeMeo, Bonnie Berger in Genome Biology
    Article Open access 25 August 2023
  19. Season, storage and extraction method impact on the phytochemical profile of Terminalia ivorensis

    Background

    Terminalia ivorensis (TI) is used in West African ethnomedicine for the treatment of conditions including ulcers, malaria and wounds....

    Aliu Moomin, Wendy R. Russell, ... Susan J. Duthie in BMC Plant Biology
    Article Open access 25 March 2023
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