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  1. Analysis of Endophytic Bacterial Diversity in Rice Seeds with Regional Characteristics in Yunnan Province, China, Based on High-Throughput Sequencing Technology

    Examining the endophytic bacteria in rice seeds from Yunnan Province displaying regional characteristics is vital for exploring strain resources,...

    **long Feng, Zhishan Wang, ... Yang Liu in Current Microbiology
    Article 17 July 2023
  2. Advances of high-throughput sequencing for unraveling biotechnological potential of microalgal-bacterial communities

    Although established biotechnological applications of microalgae e.g., the production of high-value metabolites is based on axenic cultures,...

    Petr A. Zaytsev, Vladimir A. Rodin, ... Alexei E. Solovchenko in Journal of Applied Phycology
    Article 18 May 2024
  3. Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons

    Fungal species participate in vast numbers of processes in the landscape around us. However, their cryptic mycelial growth, inside various substrates...
    Karina E. Clemmensen, Katarina Ihrmark, ... Björn D. Lindahl in Microbial Environmental Genomics (MEG)
    Protocol 2023
  4. TrieDedup: a fast trie-based deduplication algorithm to handle ambiguous bases in high-throughput sequencing

    Background

    High-throughput sequencing is a powerful tool that is extensively applied in biological studies. However, sequencers may produce...

    Jianqiao Hu, Sai Luo, ... Adam Yongxin Ye in BMC Bioinformatics
    Article Open access 18 April 2024
  5. Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data

    Key message

    An improved estimator of genomic relatedness using low-depth high-throughput sequencing data for autopolyploids is developed. Its outputs...

    Timothy P. Bilton, Sanjeev Kumar Sharma, ... Ken G. Dodds in Theoretical and Applied Genetics
    Article Open access 02 March 2024
  6. Identification of bacteria associated with canine otitis externa based on 16S rDNA high-throughput sequencing

    Bacteria are regarded as predisposing and perpetuating factors causing otitis externa (OE), whereas auricular anatomy is a predisposing factor. This...

    Suthat Saengchoowong, Rungrat Jitvaropas, ... Sunchai Payungporn in Brazilian Journal of Microbiology
    Article 27 October 2023
  7. High-throughput RNA isoform sequencing using programmed cDNA concatenation

    Full-length RNA-sequencing methods using long-read technologies can capture complete transcript isoforms, but their throughput is limited. We...

    Aziz M. Al’Khafaji, Jonathan T. Smith, ... Nir Hacohen in Nature Biotechnology
    Article 08 June 2023
  8. Applications of High-Throughput Phenotypic Phenomics

    Because of the variety of genetic components, plants are affected by complex genetic-environment-management interactions that drive phenotypic...
    Hafiz Ghulam Muhu-Din Ahmed, Yawen Zeng, ... Abdul Rehman Rashid in Sustainable Agriculture in the Era of the OMICs Revolution
    Chapter 2023
  9. High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives

    High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology, showcasing its transformative role in the management of plant...

    Mir Muhammad Nizamani, Qian Zhang, ... Yong Wang in Phytopathology Research
    Article Open access 12 September 2023
  10. Uncovering the potential molecular mechanism of liraglutide to alleviate the effects of high glucose on myoblasts based on high-throughput transcriptome sequencing technique

    Background

    Myoblasts play an important role in muscle growth and repair, but the high glucose environment severely affects their function. The purpose...

    Dongmei Fan, Yunjie Zhang, ... Bowei Liu in BMC Genomics
    Article Open access 08 February 2024
  11. High-Throughput Sequencing Technologies

    Optical and biochemical methods determine the sequence of nucleotide bases in a DNA macromolecule. Since 2010, considerable progress has been made on...
    Elakkiya Elumalai, Krishna Kant Gupta in Bioinformatics in Rice Research
    Chapter 2021
  12. Effects of tissue type and season on the detection of regulated sugarcane viruses by high throughput sequencing

    High throughput sequencing (HTS) can supplement and may replace diagnostic tests for plant pathogens. However, the methodology and processing of HTS...

    Stephen Bolus, Kate Wathen-Dunn, ... Dimitre Mollov in CABI Agriculture and Bioscience
    Article Open access 13 September 2023
  13. Finger Millet Transcriptome Analysis Using High Throughput Sequencing Technologies

    During the past two decades, high-throughput transcriptome sequencing has developed into a well-established and widely used research method....
    Rajesh Kumar Pathak, Dev Bukhsh Singh, ... Anil Kumar in The Finger Millet Genome
    Chapter 2022
  14. Single-Cell Sequencing Technology and Its Application in the Study of Central Nervous System Diseases

    The mammalian central nervous system consists of a large number of cells, which contain not only different types of neurons, but also a large number...

    Yang Ding, Yu-Yuan Peng, ... Yong-Tang Wang in Cell Biochemistry and Biophysics
    Article 22 December 2023
  15. High-Throughput Sequencing Technologies in Metagenomics: Advanced Approaches for Algal Research

    The fields of biology and environmental research have been shaped by high-throughput sequencing (HTS) technologies in the past few years. The study...
    Neha Saini, Sumit Kumar, ... Sharma Mona in Omics Insights in Environmental Bioremediation
    Chapter 2022
  16. Imaging Technology for High-Throughput Plant Phenoty**

    Plant breeding is one of the primary technologies that increase crop production, improve food and feed quality, and enhance their resilience to...
    Chapter 2022
  17. Next-generation sequencing technology: a boon to agriculture

    Next-generation sequencing (NGS) is a massively parallel sequencing technology that has revolutionized genomic research. The goal of genomics is...

    Balakrishnan Marudamuthu, Tamanna Sharma, ... Ch. Srinivasa Rao in Genetic Resources and Crop Evolution
    Article 16 December 2022
  18. The 16S rDNA high-throughput sequencing correlation analysis of milk and gut microbial communities in mastitis Holstein cows

    This study aimed to understand the changes in the milk and gut microbiota of dairy cows with mastitis, and to further explore the relationship...

    Chenxi Jiang, **aolu Hou, ... ** Liu in BMC Microbiology
    Article Open access 07 July 2023
  19. Potential value of high-throughput single-cell DNA sequencing of Juvenile myelomonocytic leukemia: report of two cases

    Juvenile myelomonocytic leukemia (JMML) is a rare myeloproliferative disease of early childhood that develops due to mutations in the genes of the...

    E. V. Volchkov, A. A. Khozyainova, ... M. A. Maschan in npj Systems Biology and Applications
    Article Open access 09 September 2023
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