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BioLegato: a programmable, object-oriented graphic user interface
BackgroundBiologists are faced with an ever-changing array of complex software tools with steep learning curves, often run on High Performance...
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Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format
BackgroundThe STRUCTURE software has gained popularity as a tool for population structure and genetic analysis. Nevertheless, formatting data to meet...
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Benchmarking MicrobIEM – a user-friendly tool for decontamination of microbiome sequencing data
BackgroundMicrobiome analysis is becoming a standard component in many scientific studies, but also requires extensive quality control of the 16S...
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EMU: reconfigurable graphical user interfaces for Micro-Manager
BackgroundAdvanced light microscopy methods are key to many biological studies. Their ease of use depends, besides experimental aspects, on intuitive...
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StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement
Cryogenic electron microscopy (cryo-EM) data represent density maps of macromolecular systems at atomic or near-atomic resolution. However, building...
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CRISPR-GRANT: a cross-platform graphical analysis tool for high-throughput CRISPR-based genome editing evaluation
BackgroudCRISPR/Cas is an efficient genome editing system that has been widely used for functional genetic studies and exhibits high potential in...
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amica: an interactive and user-friendly web-platform for the analysis of proteomics data
BackgroundQuantitative proteomics has become an increasingly prominent tool in the study of life sciences. A substantial hurdle for many biologists...
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EvoLaps: a web interface to visualize continuous phylogeographic reconstructions
BackgroundPhylogeographic reconstructions serve as a basis to understand the spread and evolution of pathogens. Visualization of these...
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MEPHAS: an interactive graphical user interface for medical and pharmaceutical statistical analysis with R and Shiny
BackgroundEven though R is one of the most commonly used statistical computing environments, it lacks a graphical user interface (GUI) that appeals...
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Use of R-Based APIs (Application Programming Interface) to Obtain Data
The purpose of this lesson is to demonstrate how R-Based APIs (Application Programming Interface) functions are used to obtain data so that...
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Var∣Decrypt: a novel and user-friendly tool to explore and prioritize variants in whole-exome sequencing data
BackgroundHigh-throughput sequencing (HTS) offers unprecedented opportunities for the discovery of causative gene variants in multiple human...
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A graphical, interactive and GPU-enabled workflow to process long-read sequencing data
BackgroundLong-read sequencing has great promise in enabling portable, rapid molecular-assisted cancer diagnoses. A key challenge in democratizing...
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Map** the functional interactions at the tumor-immune checkpoint interface
The interactions between tumor intrinsic processes and immune checkpoints can mediate immune evasion by cancer cells and responses to immunotherapy....
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Design, development, and deployment of a sensor-based aquaculture automation system
An aquaculture automation system (AcAS) is a user-friendly single-window unit. This allows end users to monitor and control the entire system easily...
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RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis
BackgroundRNA-Seq is a well-established technology extensively used for transcriptome profiling, allowing the analysis of coding and non-coding RNA...
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