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Genome Rearrangement Analysis
Genome rearrangements are mutations that change the gene content of a genome or the arrangement of the genes on a genome. Several years of research...
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From germline genome to highly fragmented somatic genome: genome-wide DNA rearrangement during the sexual process in ciliated protists
Genomes are incredibly dynamic within diverse eukaryotes and programmed genome rearrangements (PGR) play important roles in generating genomic...
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New algorithms for structure informed genome rearrangement
We define two new computational problems in the domain of perfect genome rearrangements, and propose three algorithms to solve them. The...
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The mitochondrial genome of Binodoxys acalephae (Hymenoptera: Braconidae) with unique gene rearrangement and phylogenetic implications
BackgroundSpecies in the subfamily Aphidiinae from the Braconidae of Hymenoptera are endoparasitic wasps that exclusively utilize aphids as hosts....
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Genome Editing
The genome editing prospect has altered molecular biology research and presented diverse options for detecting, imaging, manipulating, and annotating...
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Family-Free Genome Comparison
The comparison of large-scale genome structures across distinct species offers valuable insights into the species’ phylogeny, genome organization,...
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Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity
BackgroundThe mitochondrion is an important cellular component in plants and that functions in producing vital energy for the cell. However, the...
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Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions
Many tools from Computational Biology compute distances between genomes by counting the number of genome rearrangement events, such as reversals of a...
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Crucifer’s Pathogens Genome
The information on genome sequences, analysis and assembly of limited pathogens of crucifers has been generated and made available. It has given...
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Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae)
BackgroundComparative genomic analysis exhibits dynamic evolution of plastid genome (plastome) in the clusioid clade of Malpighiales, which comprise...
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The complete sequence of Lens tomentosus chloroplast genome
A self-pollinated, annual, and nutrient-rich legume, Lens tomentosus has excellent economic value since seeds of L. tomentosus are used all over the...
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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
Polyploidy or whole-genome duplication (WGD) is a major event that drastically reshapes genome architecture and is often assumed to be causally...
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Quantification and evolution of mitochondrial genome rearrangement in Amphibians
BackgroundRearrangement is an important topic in the research of amphibian mitochondrial genomes ("mitogenomes" hereafter), whose causes and...
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The complete mitochondrial genome of Eulaelaps huzhuensis (Mesostigmata: Haemogamasidae)
Some mites of the family Haemogamasidae can transmit a variety of zoonotic diseases and have important public health and safety implications....
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Phylogenetic position of Bopyroides hippolytes, with comments on the rearrangement of the mitochondrial genome in isopods (Isopoda: Epicaridea: Bopyridae)
BackgroundClassification of parasitic bopyrids has traditionally been based on morphological characteristics, but phylogenetic relationships have...
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Unraveling the complex evolutionary features of the Cinnamomum camphora mitochondrial genome
Key messageWe reported the mitochondrial genome of Cinnamomum camphora for the first time, revealing frequent rearrangement events in the non-coding...
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Genomic Islands in Bacterial Genome Evolution and Speciation
Bacterial genomes are flexible entities due to the complicated and dynamic makeup of the bacterial chromosomes. The plasticity and evolution of the...
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A chromosome-level genome reveals genome evolution and molecular basis of anthraquinone biosynthesis in Rheum palmatum
BackgroundRhubarb is one of common traditional Chinese medicine with a diverse array of therapeutic efficacies. Despite its widespread use, molecular...
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Background: Genome Editing with Programmable Nucleases
Scientists use genome editing with programmable nucleases to carry out the targeted modification of nucleic acid. The major genome editing...
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The Roles of Transposable Elements in Transgenerational Inheritance and Genome Evolution
Transposable elements and related DNA sequences, such as remnants of retrotransposons, constitute a substantial portion of eukaryotic genomes. The...