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Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database
Cultivated strawberry ( Fragaria × ananassa ) is an important fruit crop species whose fruits are enjoyed by many worldwide. An octoploid of hybrid...
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Comparative Genome Annotation
Newly sequenced genomes are being added to the tree of life at an unprecedented fast pace. A large proportion of such new genomes are...
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Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions
BackgroundThe Escherichia coli ER2566 strain (NC_CP014268.2) was developed as a BL21 (DE3) derivative strain and had been widely used in recombinant...
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PacBio Long-Read Sequencing, Assembly, and Funannotate Reannotation of the Complete Genome of Trichoderma reesei QM6a
Single-molecule real-time (SMRT) sequencing developed by Pacific BioSciences (PacBio) offers three major advantages compared to second-generation...
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The flax genome reveals orbitide diversity
BackgroundRibosomally-synthesized cyclic peptides are widely found in plants and exhibit useful bioactivities for humans. The identification of...
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The genome of the filamentous fungus Ashbya gossypii: annotation and evolutionary implications
The 9.2 Mb genome of the filamentous fungus Ashbya gossypii consists of seven chromosomes carrying 4718 protein coding genes, 194 tRNA genes, at...
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Brassica juncea Genome Sequencing: Structural and Functional Insights
Indian mustard (Brassica juncea) is one of the oldest cultivated amphidiploid crops by human civilization. Natural interspecific crossing between...
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Plastid DNA is a major source of nuclear genome complexity and of RNA genes in the orphan crop moringa
BackgroundUnlike Transposable Elements (TEs) and gene/genome duplication, the role of the so-called nuclear plastid DNA sequences (NUPTs) in sha**...
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The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes
BackgroundUnderstanding genome organization and evolution is important for species involved in transmission of human diseases, such as mosquitoes....
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Innovative computational tools provide new insights into the polyploid wheat genome
Bread wheat ( Triticum aestivum ) is an important crop and serves as a significant source of protein and calories for humans, worldwide. Nevertheless,...
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Characterization of stilbene synthase genes by comparative genome sequencing of Vitis flexuosa with high contents of stilbene compounds to Vitis vinifera genome
Grapevine is an economically important fruit crop with high secondary metabolite content. The stilbene contents in ripe berries were significantly...
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Genome – molekulare Landkarten von Lebewesen
Aufbauend auf Sequenzvergleichen assemblieren spezielle Algorithmen die Sequenzfragmente moderner Sequenzierungstechniken. Nachdem in den...
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The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes
BackgroundThe nematode Pristionchus pacificus is an established model organism for comparative studies with Caenorhabditis elegans . Over the past...
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Genomes: Molecular Maps of Living Organisms
Based on sequence comparisonsSequence comparisons, special algorithms assemble the sequence fragments of modern sequencing techniques. After...
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A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans
BackgroundPathogens of the genus Phytophthora are the etiological agents of many devastating diseases in several high-value crops and forestry...
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The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae
The Rosaceae family has striking phenotypic diversity and high syntenic conservation. Gillenia trifoliata is sister species to the Maleae tribe of...
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Complete mitochondrial genome of Thuja sutchuenensis and its implications on evolutionary analysis of complex mitogenome architecture in Cupressaceae
BackgroundThe complex physical structure and abundant repeat sequences make it difficult to assemble the mitogenomes of seed plants, especially...
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Bioinformatics Methods for Prediction of Gene Families Encoding Extracellular Peptides
Genes encoding small secreted peptides are widely distributed among plant genomes but their detection and annotation remains challenging. The...
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Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions
BackgroundAllopolyploid breeding is an efficient technique for improving the low seed setting rate of autotetraploids in plant breeding and one of...
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Scope of Proteogenomic Analysis for Indian Sandalwood (Santalum Album)
Sandalwood oil is recognized as the queen of essential oils due to its highly valued fragrance. Globally, 16 species of sandalwood have been...