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Identification of superior and rare haplotypes to optimize branch number in soybean
Key messageUsing the integrated approach in the present study, we identified eleven significant SNPs, seven stable QTLs and 20 candidate genes...
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Three-dimensional branch segmentation and phenotype extraction of maize tassel based on deep learning
BackgroundThe morphological structure phenotype of maize tassel plays an important role in plant growth, reproduction, and yield formation. It is an...
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Identification and function analysis of GABA branch three gene families in the cotton related to abiotic stresses
γ -aminobutyric acid (GABA) is closely related to the growth, development and stress resistance of plants. Combined with the previous study of GABA...
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Approach for graph-based individual branch modelling of meadow orchard trees with 3D point clouds
The cultivation of meadow orchards provides an ecological benefit for biodiversity, which is significantly higher than in intensively cultivated...
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A Comparative Analysis of Metabolome Reveals the Regulation of the Anthocyanin Biosynthesis Branch in Potatoes
A comparative metabolomic analysis was performed using purple potato tubers and derived red mutant tubers to investigate the regulation of...
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Widespread false gene gains caused by duplication errors in genome assemblies
BackgroundFalse duplications in genome assemblies lead to false biological conclusions. We quantified false duplications in popularly used previous...
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BPB1 regulates rice (Oryza sative L.) panicle length and panicle branch development by promoting lignin and inhibiting cellulose accumulation
Panicle structure is one of the most important agronomic traits directly related to rice yield. This study identified a rice mutant basal primary...
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ASI-DBNet: An Adaptive Sparse Interactive ResNet-Vision Transformer Dual-Branch Network for the Grading of Brain Cancer Histopathological Images
Brain cancer is the deadliest cancer that occurs in the brain and central nervous system, and rapid and precise grading is essential to reduce...
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Native bio-control agents from the rice fields of Telangana, India: characterization and unveiling the potential against stem rot and false smut diseases of rice
The stem rot caused by Sclerotium hydrophilum and false smut caused by Ustilaginoidea virens are two of the major production constraints in rice...
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Deploying QTL-seq rapid identification and separation of the major QTLs of tassel branch number for fine-map** in advanced maize populations
The tassel competes with the ear for nutrients and shields the upper leaves, thereby reducing the yield of grain. The tassel branch number (TBN) is a...
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Microrhagus pyrenaeus Bonvouloir, 1872 and Hylis simonae (Olexa, 1970), Species of False Click Beetles (Coleoptera, Eucnemidae) New to the Russian Fauna
AbstractTwo species of false click beetles, Microrhagus pyrenaeus Bonvouloir, 1872 and Hylis simonae (Olexa, 1970), previously considered endemic to...
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DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data
BackgroundThe widespread usage of Cap Analysis of Gene Expression (CAGE) has led to numerous breakthroughs in understanding the transcription...
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From inside to outside: CT scanning as a tool to link internal knot structure and external branch diameter as a prerequisite for quality assessment
Branches are as essential for tree growth as knots are detrimental from the wood quality point of view. To bridge the gap between tree growth and the...
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Transcriptome and metabolite analysis related to branch development in two genotypes of Eucalyptus urophylla
Branching in long-lived plants can cause scarring at the base and affect wood density, which greatly inhibits wood yield and quality. Eucalyptus...
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Origin, structure and functional transition of sex pheromone components in a false widow spider
Female web-building spiders disseminate pheromone from their webs that attracts mate-seeking males and deposit contact pheromone on their webs that...
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Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem
The last decade of phylogenetics has seen the development of many methods that leverage constraints plus dynamic programming. The goal of this...
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Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants
BackgroundBranch points (BPs) map within short motifs upstream of acceptor splice sites (3’ss) and are essential for splicing of pre-mature mRNA....
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A phylogenetic approach to study the evolution of somatic mutational processes in cancer
Cancer cell genomes change continuously due to mutations, and mutational processes change over time in patients, leaving dynamic signatures in the...
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Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral
BackgroundAdaptive changes in cis -regulatory elements are an essential component of evolution by natural selection. Identifying adaptive and...
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SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data
We present SIEVE, a statistical method for the joint inference of somatic variants and cell phylogeny under the finite-sites assumption from...
